Results for the job "vMT8dK Thu Jul 22 17:57:48
2004":
Parameters:
PWM threshold: 80
%
Homology threshold: 50 %
Flank length: 15
bp
Plain files:
Raw
TFBSs data
List
of CONREAL aligned TFBSs
CONREAL
alignment
Graphical representation of aligned TFBSs.
Bars represent number of
aligned hits found within 20 bp window calculated in coordinates of the longer
sequence.
Each black line represents an aligned TFBS.
CONREAL:
CONREAL alignment:
Aligned TFBSs are shown in uppercase.
No attempts
were made to align regions not covered by TFBSs (lowercase).
10 20
Myo7a(Mousccctatgccctctgtcctccc---------------------------------------
|
MYO7A(human)tgacggaagcagctgggcagtggggcctgtgaccagcaggcggcgctggcgagctatagc
10 20 30 40 50 60
Myo7a(Mous------------------------------------------------------------
MYO7A(human)gcccctttgggcccccaccccaccttctgggcagcttccctgcagacaccccagttatgg
70 80 90 100 110 120
30 40
Myo7a(Mous------------------------------------CATAGCTGCCtccttaatgtcccc
|| ||||||| | || | |
MYO7A(human)gggctagggacccaaaagagacatccttctgccaccCAGAGCTGCCctggcgaggtgcac
130 140 150 160 170 180
50 60 70 80 90 100
Myo7a(Moustcctgcctcagggcccttgctcacaccgtccctgctgccctttccttgcctgattgcttt
| | | | | | | | | | | ||
MYO7A(human)tatggggccgccgacagctgcgtggctgccgagggcggaaaggagaaactgtcatgtccc
190 200 210 220 230 240
110 120 130 140 150 160
Myo7a(Moustgcccttcagatctcaacgtagaggtttcctccactgcgtagttcattggttgccaactt
| | | | | | || | ||
MYO7A(human)gatagggccgcgcgaggtctccatcctcgacaacgctaataacaaagacgtgt-------
250 260 270 280 290
170 180 190 200 210 220
Myo7a(MousggagtgtcattctcttgccgttgcctgtcattctctgtcactttgggttCCTCCCTtctg
|||| |
MYO7A(human)-------------------------------------------------GCTCCTCt---
300
230 240 250 260 270 280
Myo7a(MousctctgctcaccagggtccacagggacctgggaagagctTTGCTTGCTtggttgtcaccgt
||||||| || | |
MYO7A(human)--------------------------------------TTGCTTGGTtccccccactcct
310 320
290 300 310 320 330 340
Myo7a(Moustttaactttttcaattagaatggaaattctataatggtctctgctccttctaaatcaagc
|| || | | | ||| | | | ||
MYO7A(human)ttaaatcacagatttcacttcagtttatctgtgtcgctgtcacacgtggggtggctccca
330 340 350 360 370 380
350 360 370 380 390 400
Myo7a(Mousaggactttgtattcagtaggtgtccaatacatgtttgttgaataaatcaggatggaatag
MYO7A(human)gt----------------------------------------------------------
410 420 430 440 450
Myo7a(MousaattgttctgagtccagctctggatttaattCGGCTCCCTAAGCTAAGT-----------
| ||| | || ||||
MYO7A(human)-------------------------------CAGCTGGTTTGGCAAAGTttctggatgat
390 400 410
460 470 480
Myo7a(Mous------------------------------GTCAGGCTttgtactggatgctgcagagaa
|||| | || ||| |||| ||
MYO7A(human)tacggaataacatgtgtccccaacccgcagAGCAGGTTgtgggggcaatgttgcattgac
420 430 440 450 460 470
490 500 510 520 530 540
Myo7a(Mouscgtgacaatgcccctcccccaccaccttcgaggtctgggctctcctcacaaaaaggagtt
| | | | | | | | | || |
MYO7A(human)cagcgtcagagaacacacatcagaggcaagggtgggtgtgcaggagggagaaggcgcaga
480 490 500 510 520 530
550
Myo7a(Mousggcgtggcc---------------------------------------------------
| || |
MYO7A(human)aggcagggctttagctcagcactctccctcctgccatgctctgcctgaccgttccctctc
540 550 560 570 580 590
560 570
Myo7a(Mous---------------------------------------TTGTACCCcaggctcagcaga
|| ||| || || |||
MYO7A(human)tgagtcccaaacagccaggtagaggaggaagaaatggggCTGAGACCccagcacatcagt
600 610 620 630 640 650
580 590 600 610 620 630
Myo7a(Mousgagcagtaggcttacaggaacccttttgctagggtgatttgatggagccttcgatgtttg
|| | |
MYO7A(human)gattaagtcaggatc---------------------------------------------
660
640 650 660 670 680 690
Myo7a(Mousccacaccctagtgggccctgtgtctccctttgggatagaaaggacgtgatttggtgtgcc
MYO7A(human)------------------------------------------------------------
700 710 720 730 740 750
Myo7a(Moustgccttagtctctagtctgtcaggtgcctgtgtgaccagaaaccatgggctgcacagcct
MYO7A(human)------------------------------------------------------------
760 770 780 790 800 810
Myo7a(MouscgtggctgaggttgcccttCCGTGCTGTTGgctgctcctcttcatgagcctcggctcact
|||| ||| |||||| | | | | |
MYO7A(human)-------------------AGGTGCGGTTTcctgctcaggtgctgagacagcaggcggtg
670 680 690 700 710
820 830 840 850 860 870
Myo7a(Mouscacctggaggtgaggggacctgacttacagaagaggcactgatgacatggtatgagcccc
| | || | | | | | ||
MYO7A(human)tcctgcaaacaacaggaggcacctgaagctagcctggggggcccacgcccaggtgcggtg
720 730 740 750 760 770
880 890 900 910 920
Myo7a(Mousa-------------GCCTAAGGCTGGCCAccatgagcctcccagaaatcaagggttccct
||| || | | || | |||| || || | | |
MYO7A(human)cattcagcagcacaGCCAGAGACAGACCCcaatgaccccgcctccctgtcggcagccagt
780 790 800 810 820 830
930 940 950 960
Myo7a(Mouscacccctgtcttctggctcggattccaagccttggtggtagtg-----------------
| | | | | | |
MYO7A(human)gctctgcacagagccctgagcagcctctggacattagtcccagccccagcacggcccgtc
840 850 860 870 880 890
Myo7a(Mous------------------------------------------------------------
MYO7A(human)ccccacgctgatgtcaccgcacccagaccttggaggccccctccggctccgcctcctggg
900 910 920 930 940 950
970 980 990 1000
Myo7a(Mous--------------------GGAGAGAGgggctcaacttcaggatctcctgcctac-
|| ||| | || || | | |||
MYO7A(human)agaaggctctggagtgaggaGGGGAGGGcagcagtgctggctggacagctg-----C
960 970 980 990 1000
CONREAL aligned hits:
| Matrix |
Identity |
Seq1 from |
Seq1 to |
Seq2 from |
Seq2 to |
Strand |
Score1 |
Score2 |
Rel.Score1 |
Rel.Score2 |
Factor |
| M00176 |
0.53 |
22 |
31 |
157 |
166 |
1 |
6.879 |
6.879 |
0.81 |
0.81 |
AP-4 |
| M00175 |
0.53 |
22 |
31 |
157 |
166 |
2 |
6.605 |
8.614 |
0.82 |
0.89 |
AP-4 |
| M00712* |
0.55 |
24 |
31 |
159 |
166 |
2 |
7.186 |
7.186 |
0.86 |
0.86 |
Pro
only |
| M00644* |
0.54 |
24 |
30 |
159 |
165 |
1 |
6.451 |
6.451 |
0.85 |
0.85 |
Pro
only |
| M00695* |
0.51 |
215 |
221 |
294 |
300 |
2 |
5.186 |
4.962 |
0.82 |
0.81 |
Pro
only |
| M00096 |
0.54 |
264 |
272 |
302 |
310 |
2 |
5.665 |
6.987 |
0.80 |
0.84 |
Pbx-1 |
| M00644* |
0.54 |
437 |
443 |
386 |
392 |
1 |
5.546 |
9.289 |
0.80 |
0.98 |
Pro
only |
| M00159 |
0.56 |
442 |
454 |
391 |
403 |
2 |
5.209 |
5.769 |
0.80 |
0.82 |
C/EBP |
| M00670* |
0.50 |
455 |
462 |
445 |
452 |
1 |
6.665 |
7.955 |
0.84 |
0.90 |
Pro
only |
| M00646* |
0.53 |
554 |
561 |
634 |
641 |
2 |
5.551 |
6.725 |
0.80 |
0.85 |
Pro
only |
| M00773* |
0.51 |
774 |
784 |
670 |
680 |
1 |
5.659 |
6.622 |
0.81 |
0.85 |
Pro
only |
| M00469* |
0.54 |
876 |
884 |
785 |
793 |
1 |
7.990 |
5.906 |
0.92 |
0.85 |
Pro
only |
| M00272 |
0.55 |
881 |
890 |
790 |
799 |
2 |
6.898 |
5.498 |
0.85 |
0.82 |
p53 |
| M00649* |
0.50 |
965 |
972 |
971 |
978 |
1 |
6.920 |
12.480 |
0.81 |
1.00 |
Pro
only |