Alignment of NM_018366 and chr4:6782384-6783929
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frame to left to navigate through alignment. Matching bases in coding regions of
cDNA and genomic sequences are colored blue and capitalized. Matching bases in
UTR regions of cDNA and genomic sequences are colored red and capitalized. Light
blue (coding) or orange (UTR) bases mark the boundaries of gaps in either side
of the alignment (often splice sites).
cDNA NM_018366
AAAGGCGTGA GCGCGCGTGC GTGCGTGTGC GGGTGCGTGA GCGTGAGCGC 50
GCGGAGGCCG GAAGCGAGCG CTGCGCAGTC GGGTGGTCGC GGGCCATGGA 100
GGGTAGCTTT TCGGATGGCG GAGCGCTGCC GGAGGGGCTC GCGGAAGAGG 150
CCGAGCCGCA GGGCGCCGCC TGGAGCGGGG ACAGTGGCAC TGTTTCCCAG 200
AGCCACAGCA GCGCCTCGGG GCCGTGGGAG GACGAGGGCG CGGAGGACGG 250
CGCGCCGGGC CGCGACCTGC CGCTGCTTCG CCGCGCCGCT GCGGGCTACG 300
CCGCCTGCCT GCTGCCCGGG GCCGGGGCGC GGCCCGAGGT CGAGGCCCTG 350
GACGCGAGCC TAGAGGACCT GCTTACCAGA GTGGACGAGT TCGTGGGCAT 400
GCTGGACATG CTTCGCGGCG ACTCGTCCCA CGTCGTCAGC GAGGGCGTGC 450
CGCGCATCCA CGCGAAGGCC GCCGAGATGC GGCGCATCTA CAGCAGGATC 500
GACCGGCTGG AGGCCTTCGT GAGGATGGTG GGGGGCCGCG TGGCCAGGAT 550
GGAGGAGCAG GTCACCAAGG CCGAGGCCGA GCTGGGCACC TTCCCCAGGG 600
CGTTCAAGAA GCTCCTGCAC ACGATGAACG TGCCCTCGCT CTTTAGCAAG 650
TCTGCTCCCT CGAGGCCACA GCAAGCCGGC TACGAAGCCC CCGTCCTGTT 700
TCGGACCGAA GACTACTTCC CTTGTTGCAG TGAAAGGCCT CAGCTCTGAC 750
GGCCTGACCA CTGCGGCAAG AGGACCCCAG CTGGGGTGCT TACCTCCAGT 800
ATGAAGTGAA TTGCAAATCC TGCTTATGGA CATATATGAT GTTGGAGTGT 850
GGGATTTTAA AGTTTACTTT CTACAAACTC TCCGTAGTAT ATTCATGATT 900
CAGTGTAGAA TGTATAGACT TTATGTCTTC CAAGTTTAAA AAAAGAGACA 950
GGGTCTTGGT ATGTTGCCCA GACTGTTCGG AAACTCCTGG GCTCAAGTGA 1000
TCCTTCCACC TCAGCCTCCC CAGTAGCTGG GACTACGGGG TCGCCACTGC 1050
ACCCAGCCTG TGTCTTCCAG CTCTAATCAG AAAGCTGCTT GTCGAGGGCA 1100
TGGGGAATCA AACTGAATGA ACTTTTCTCT GCACTGTGGC AAAACTGTTA 1150
TTTTTATGGA TTTTACTAAA TGGCGTTACC TTTTCAAGAT TTATATGTTT 1200
GTATAATCAT AAGAAAATTG AGCCATTAAA GCCTTGTTAT TCAATCCTAA 1250
TAGTCAGTTT TCTAGAACCT ACTTTTAGGG TAAATGGTAC ATTATTTAAT 1300
ATTATATTAA ACCTCCTATA GCGTGGATTG TAGACCAAAG GAAATGGTAC 1350
AATTTCTGAG AATATATGTT GATTTTTTGT GACTAATTCC AAAGTTGTAT 1400
TTGAAAGTAT GACCTCACAG TCTTCATTTG TCCATAGCAA ACATATGTGT 1450
GTGTGTGTGT ATATATATAT GTGGGTTGCC AATGTTTGGT TTATAATTTA 1500
AATGTTAATA GAAATTTTGA GTTTTATTGG AAATGATTTC CTTCTG
Genomic chr4 :
tgcgtgagcg tgagcgcgca tgcgtgagcg tgagcgcgct gggaggccgg 6782333
aaacaaaggt ggatgcgcgt gaacagacgc cctcgcaggc cgccggaagc 6782383
AAAGGCGTGA GCGCGCGTGC GTGCGTGTGC GGGTGCGTGA GCGTGAGCGC 6782433
GCGGAGGCCG GAAGCGAGCG CTGCGCAGTC GGGTGGTCGC GGGCCATGGA 6782483
GGGTAGCTTT TCGGATGGCG GAGCGCTGCC GGAGGGGCTC GCGGAAGAGG 6782533
CCGAGCCGCA GGGCGCCGCC TGGAGCGGGG ACAGTGGCAC TGTTTCCCAG 6782583
AGCCACAGCA GCGCCTCGGG GCCGTGGGAG GACGAGGGCG CGGAGGACGG 6782633
CGCGCCGGGC CGCGACCTGC CGCTGCTTCG CCGCGCCGCT GCGGGCTACG 6782683
CCGCCTGCCT GCTGCCCGGG GCCGGGGCGC GGCCCGAGGT CGAGGCCCTG 6782733
GACGCGAGCC TAGAGGACCT GCTTACCAGA GTGGACGAGT TCGTGGGCAT 6782783
GCTGGACATG CTTCGCGGCG ACTCGTCCCA CGTCGTCAGC GAGGGCGTGC 6782833
CGCGCATCCA CGCGAAGGCC GCCGAGATGC GGCGCATCTA CAGCAGGATC 6782883
GACCGGCTGG AGGCCTTCGT GAGGATGGTG GGGGGCCGCG TGGCCAGGAT 6782933
GGAGGAGCAG GTCACCAAGG CCGAGGCCGA GCTGGGCACC TTCCCCAGGG 6782983
CGTTCAAGAA GCTCCTGCAC ACGATGAACG TGCCCTCGCT CTTTAGCAAG 6783033
TCTGCTCCCT CGAGGCCACA GCAAGCCGGC TACGAAGCCC CCGTCCTGTT 6783083
TCGGACCGAA GACTACTTCC CTTGTTGCAG TGAAAGGCCT CAGCTCTGAC 6783133
GGCCTGACCA CTGCGGCAAG AGGACCCCAG CTGGGGTGCT TACCTCCAGT 6783183
ATGAAGTGAA TTGCAAATCC TGCTTATGGA CATATATGAT GTTGGAGTGT 6783233
GGGATTTTAA AGTTTACTTT CTACAAACTC TCCGTAGTAT ATTCATGATT 6783283
CAGTGTAGAA TGTATAGACT TTATGTCTTC CAAGTTTAAA AAAAGAGACA 6783333
GGGTCTTGGT ATGTTGCCCA GACTGTTCGG AAACTCCTGG GCTCAAGTGA 6783383
TCCTTCCACC TCAGCCTCCC CAGTAGCTGG GACTACGGGG TCGCCACTGC 6783433
ACCCAGCCTG TGTCTTCCAG CTCTAATCAG AAAGCTGCTT GTCGAGGGCA 6783483
TGGGGAATCA AACTGAATGA ACTTTTCTCT GCACTGTGGC AAAACTGTTA 6783533
TTTTTATGGA TTTTACTAAA TGGCGTTACC TTTTCAAGAT TTATATGTTT 6783583
GTATAATCAT AAGAAAATTG AGCCATTAAA GCCTTGTTAT TCAATCCTAA 6783633
TAGTCAGTTT TCTAGAACCT ACTTTTAGGG TAAATGGTAC ATTATTTAAT 6783683
ATTATATTAA ACCTCCTATA GCGTGGATTG TAGACCAAAG GAAATGGTAC 6783733
AATTTCTGAG AATATATGTT GATTTTTTGT GACTAATTCC AAAGTTGTAT 6783783
TTGAAAGTAT GACCTCACAG TCTTCATTTG TCCATAGCAA ACATATGTGT 6783833
GTGTGTGTGT ATATATATAT GTGGGTTGCC AATGTTTGGT TTATAATTTA 6783883
AATGTTAATA GAAATTTTGA GTTTTATTGG AAATGATTTC CTTCTGaaaa 6783933
gagctttacg tatttccttg tgtgtgtttg aaatagacgt actgctcatg 6783983
tgctttttta gtagtgggat aaagaaaagg ggcttgagta tacctc
Side by Side Alignment
0000001 aaaggcgtgagcgcgcgtgcgtgcgtgtgcgggtgcgtgagcgtgagcgc 0000050
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6782384 aaaggcgtgagcgcgcgtgcgtgcgtgtgcgggtgcgtgagcgtgagcgc 6782433
0000051 gcggaggccggaagcgagcgctgcgcagtcgggtggtcgcgggccatgga 0000100
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6782434 gcggaggccggaagcgagcgctgcgcagtcgggtggtcgcgggccatgga 6782483
0000101 gggtagcttttcggatggcggagcgctgccggaggggctcgcggaagagg 0000150
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6782484 gggtagcttttcggatggcggagcgctgccggaggggctcgcggaagagg 6782533
0000151 ccgagccgcagggcgccgcctggagcggggacagtggcactgtttcccag 0000200
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6782534 ccgagccgcagggcgccgcctggagcggggacagtggcactgtttcccag 6782583
0000201 agccacagcagcgcctcggggccgtgggaggacgagggcgcggaggacgg 0000250
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6782584 agccacagcagcgcctcggggccgtgggaggacgagggcgcggaggacgg 6782633
0000251 cgcgccgggccgcgacctgccgctgcttcgccgcgccgctgcgggctacg 0000300
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6782634 cgcgccgggccgcgacctgccgctgcttcgccgcgccgctgcgggctacg 6782683
0000301 ccgcctgcctgctgcccggggccggggcgcggcccgaggtcgaggccctg 0000350
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6782684 ccgcctgcctgctgcccggggccggggcgcggcccgaggtcgaggccctg 6782733
0000351 gacgcgagcctagaggacctgcttaccagagtggacgagttcgtgggcat 0000400
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6782734 gacgcgagcctagaggacctgcttaccagagtggacgagttcgtgggcat 6782783
0000401 gctggacatgcttcgcggcgactcgtcccacgtcgtcagcgagggcgtgc 0000450
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6782784 gctggacatgcttcgcggcgactcgtcccacgtcgtcagcgagggcgtgc 6782833
0000451 cgcgcatccacgcgaaggccgccgagatgcggcgcatctacagcaggatc 0000500
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6782834 cgcgcatccacgcgaaggccgccgagatgcggcgcatctacagcaggatc 6782883
0000501 gaccggctggaggccttcgtgaggatggtggggggccgcgtggccaggat 0000550
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6782884 gaccggctggaggccttcgtgaggatggtggggggccgcgtggccaggat 6782933
0000551 ggaggagcaggtcaccaaggccgaggccgagctgggcaccttccccaggg 0000600
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6782934 ggaggagcaggtcaccaaggccgaggccgagctgggcaccttccccaggg 6782983
0000601 cgttcaagaagctcctgcacacgatgaacgtgccctcgctctttagcaag 0000650
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6782984 cgttcaagaagctcctgcacacgatgaacgtgccctcgctctttagcaag 6783033
0000651 tctgctccctcgaggccacagcaagccggctacgaagcccccgtcctgtt 0000700
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783034 tctgctccctcgaggccacagcaagccggctacgaagcccccgtcctgtt 6783083
0000701 tcggaccgaagactacttcccttgttgcagtgaaaggcctcagctctgac 0000750
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783084 tcggaccgaagactacttcccttgttgcagtgaaaggcctcagctctgac 6783133
0000751 ggcctgaccactgcggcaagaggaccccagctggggtgcttacctccagt 0000800
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783134 ggcctgaccactgcggcaagaggaccccagctggggtgcttacctccagt 6783183
0000801 atgaagtgaattgcaaatcctgcttatggacatatatgatgttggagtgt 0000850
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783184 atgaagtgaattgcaaatcctgcttatggacatatatgatgttggagtgt 6783233
0000851 gggattttaaagtttactttctacaaactctccgtagtatattcatgatt 0000900
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783234 gggattttaaagtttactttctacaaactctccgtagtatattcatgatt 6783283
0000901 cagtgtagaatgtatagactttatgtcttccaagtttaaaaaaagagaca 0000950
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783284 cagtgtagaatgtatagactttatgtcttccaagtttaaaaaaagagaca 6783333
0000951 gggtcttggtatgttgcccagactgttcggaaactcctgggctcaagtga 0001000
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783334 gggtcttggtatgttgcccagactgttcggaaactcctgggctcaagtga 6783383
0001001 tccttccacctcagcctccccagtagctgggactacggggtcgccactgc 0001050
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783384 tccttccacctcagcctccccagtagctgggactacggggtcgccactgc 6783433
0001051 acccagcctgtgtcttccagctctaatcagaaagctgcttgtcgagggca 0001100
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783434 acccagcctgtgtcttccagctctaatcagaaagctgcttgtcgagggca 6783483
0001101 tggggaatcaaactgaatgaacttttctctgcactgtggcaaaactgtta 0001150
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783484 tggggaatcaaactgaatgaacttttctctgcactgtggcaaaactgtta 6783533
0001151 tttttatggattttactaaatggcgttaccttttcaagatttatatgttt 0001200
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783534 tttttatggattttactaaatggcgttaccttttcaagatttatatgttt 6783583
0001201 gtataatcataagaaaattgagccattaaagccttgttattcaatcctaa 0001250
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783584 gtataatcataagaaaattgagccattaaagccttgttattcaatcctaa 6783633
0001251 tagtcagttttctagaacctacttttagggtaaatggtacattatttaat 0001300
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783634 tagtcagttttctagaacctacttttagggtaaatggtacattatttaat 6783683
0001301 attatattaaacctcctatagcgtggattgtagaccaaaggaaatggtac 0001350
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783684 attatattaaacctcctatagcgtggattgtagaccaaaggaaatggtac 6783733
0001351 aatttctgagaatatatgttgattttttgtgactaattccaaagttgtat 0001400
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783734 aatttctgagaatatatgttgattttttgtgactaattccaaagttgtat 6783783
0001401 ttgaaagtatgacctcacagtcttcatttgtccatagcaaacatatgtgt 0001450
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783784 ttgaaagtatgacctcacagtcttcatttgtccatagcaaacatatgtgt 6783833
0001451 gtgtgtgtgtatatatatatgtgggttgccaatgtttggtttataattta 0001500
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783834 gtgtgtgtgtatatatatatgtgggttgccaatgtttggtttataattta 6783883
0001501 aatgttaatagaaattttgagttttattggaaatgatttccttctg 0001546
>>>>>>> |||||||||||||||||||||||||||||||||||||||||||||| <<<<<<<
6783884 aatgttaatagaaattttgagttttattggaaatgatttccttctg 6783929