Results for the job "OsUN92 Fri Jul 2 17:53:37
2004":
Parameters:
PWM threshold: 80
%
Homology threshold: 50 %
Flank length: 15
bp
Plain files:
Raw
TFBSs data
List
of CONREAL aligned TFBSs
CONREAL
alignment
Graphical representation of aligned TFBSs.
Bars represent number of
aligned hits found within 20 bp window calculated in coordinates of the longer
sequence.
Each black line represents an aligned TFBS.
CONREAL:
CONREAL alignment:
Aligned TFBSs are shown in uppercase.
No attempts
were made to align regions not covered by TFBSs (lowercase).
10 20 30 40 50 60
RABGGTA-Huaaaaatggattcagtagcacagaggatggactgataacaagggatgaggtggagaacact
| | || | | | | |
Rabggta-Mousettcgctctgtaagccaggctggcctctaactcagagaactgcctgcttctacctcctgag
10 20 30 40 50 60
70 80 90 100 110 120
RABGGTA-Hugaaaagactttcaacaatctggagaagaaattcggagtttgaactcctagtggcagtggg
| | | | | | | | | | | | |
Rabggta-Mousetgctgggatcaaaggcagtgtgccaccactgcccagtgatactcaatttttaaaaaaatt
70 80 90 100 110 120
130 140 150 160 170 180
RABGGTA-Huaagagaaagagtatttaagcgagtttaagaagtgaggaggaaatagtgccattcactaca
| | | |||| | | ||| | | | |
Rabggta-Mouseagaaacctcactattatcttaaactctagaccctcctgtgtcgaccccctgagaagctga
130 140 150 160 170 180
190 200 210 220 230 240
RABGGTA-Huatagaaaacataaaggccaatgtttagacaggatggatgaaagataatttataccttttg
| | | | | | | | | | || | |
Rabggta-Mouseacattacaaacagcaccactgcctctagcttttgaccatgtcaacaaatacatatactgc
190 200 210 220 230 240
250 260 270 280 290 300
RABGGTA-Hugcttttggagtttgaggtgtctctgggacaccaggtgatatccaacaggtgtttgaatat
| | || | | | | ||
Rabggta-Mousetatataattgtcactatcattatgcttgtggacgtctggactggagag------------
250 260 270 280
310 320 330 340 350 360
RABGGTA-Hugtatgtgcatgtatattatttattgttatttaagcttgcaagacatctgggctggagata
Rabggta-Mouse------------------------------------------------------------
370 380 390 400 410 420
RABGGTA-HutAAATTTGGGTGtcatcaatttacaggtagtaattaaaacaatgAGTGTGGAtgaactca
| |||||||| ||| | | || | ||| ||||
Rabggta-Mouse-AGGTTTGGGTGccatatagtaaccatg----------------AATGTAGAtg------
290 300 310 320
430 440 450 460 470 480
RABGGTA-Hucccagagaaagtgtaatgccagatttgtgggccaaaacagctctgaggagctccaactcg
Rabggta-Mouse------------------------------------------------------------
490 500 510 520 530 540
RABGGTA-Huaagcagttgaaggcttacatttaaacattctcccaggaacagtgggtgaagtgaaaaagg
Rabggta-Mouse------------------------------------------------------------
550 560 570 580 590 600
RABGGTA-HuggtgaggaaagggccctggagatcaccaacatttaggggtggaggtgAACAGATGAGAAG
|| | |||||
Rabggta-Mouse-----------------------------------------------AAATCAAGAGAAC
330 3
610 620 630 640 650 660
RABGGTA-HuAGAGAGGcagaggtgcaggaggagaagccagaatgggggtgtcaagtataaagaaatggg
|| ||| | | | | | |||||||| | | |
Rabggta-MouseAGGAAGGaaaccgagaacttttggcagccagaactcgctgatagcaggt-----------
40 350 360 370 380
670 680 690 700 710 720
RABGGTA-Hutagcgtcaaatgcttcagaggttagagaaaatgacaggaaactccccctgttagatttga
Rabggta-Mouse------------------------------------------------------------
730 740 750 760 770 780
RABGGTA-Hucatctagaaggctgtcggtgtggccagggtgaggtcagtggagtagtgaaggtgcgggtt
Rabggta-Mouse------------------------------------------------------------
790 800 810 820 830 840
RABGGTA-HutccggcTGTTGGAGAAACCTCTTCCActaactacattgcactctgagttaccaactggca
|| ||||||||| ||||| || | || |
Rabggta-Mouse------TGCTGGAGAAACTTCTTCACttagcctggaaagggactctagccagcctgagtt
390 400 410 420 430 440
850 860 870 880 890 900
RABGGTA-Hutggtcctccccccatttcacacgcacgctacagtcgcccgtgcgcactcgtacacaccag
||| | | | | || || || | | | | |
Rabggta-Mousetggcaaacatggctctgtcaggccttgcccttctctccactccctctgtcttgctaaaaa
450 460 470 480 490 500
910 920 930 940 950 960
RABGGTA-Hugtggctaacaggtacgaggcgtttccggacagcgagcgcagagcccccgcgcacgcgcct
| || | | | | | || | | |
Rabggta-Mousecgttagattgagttcctaaagctagctaccgagatccgttcccttattcacctcatccta
510 520 530 540 550 560
970
RABGGTA-Huccgagccggcct------------------------------------------------
|
Rabggta-Mouseacacaggatttccccttttacctttataaactgccactctcctatgggccatgcctgtct
570 580 590 600 610 620
980
RABGGTA-Hu----------------------------------------------CTTCCGCCgcaagt
| | | || | ||
Rabggta-MousecctctctattcaaagacagtcctttgtcccctcttcgagagaaataCCTGCCCCccccgt
630 640 650 660 670 680
990 1000 1010 1020 1030 1040
RABGGTA-Huccctccccaagcctgcagagtgcgctgcgtttcgatgagccgggacgtggcgccgctcta
||| |||| ||| | | | | |
Rabggta-Mousecccccccctcccctcttctctttccccttctccatctcctgtcttgtctcttattcctat
690 700 710 720 730 740
1050 1060
RABGGTA-Hugccagcgcctgggctct-------------------------------------------
| ||
Rabggta-Mouseacttcgtccctctagggcaaataaagctcctttgtcctgaaaacttggtcttggggtgtc
750 760 770 780 790 800
RABGGTA-Hu------------------------------------------------------------
Rabggta-Mousectgagccgataccagtcccttcaaggctgcagtttgagttgcgaatgggaagagccaggc
810 820 830 840 850 860
RABGGTA-Hu------------------------------------------------------------
Rabggta-Mousectgcagggggcgcagcgcctcgtctccgcacctcacacagcacggagccgctctagccac
870 880 890 900 910 920
RABGGTA-Hu------------------------------------------------------------
Rabggta-Mouseactgggactcggtggcggccggagttgcacgtcctggcacctcctccctgagcaggtgag
930 940 950 960 970 980
RABGGTA-Hu------------------------------------------------------------
Rabggta-Mousettcgccggtggaggagggggtgcaagggtccacgggacggacggacgggcgggcgggcac
990 1000 1010 1020 1030 1040
1070 1080 1090 1100 111
RABGGTA-Hu--------------GTGGCGGGcgccgcagctccgcgtcccccgcgcctcctcccagcgc
| |||| | ||| | || | | | | |
Rabggta-MousetgctctctatatgcGCGGCGTGtgcctcggccctgacgggtggggcttcggaaagatccg
1050 1060 1070 1080 1090 1100
0 1120
RABGGTA-Huagacttcaagggctaccact----------------------------------------
| | ||| |
Rabggta-Mousetggggacggaggccgtggttgtggtgagcgcttcctcctgacctcacagtgccagccgcc
1110 1120 1130 1140 1150 1160
1130 1140 1150 1160
RABGGTA-Hu-----GGACCCTTCCCCTGTCTTgaaccctgagccggcacc-
| | |
Rabggta-MouseggcccCCTTTTAACTCACGGGGA------------------T
1170 1180
CONREAL aligned hits:
| Matrix |
Identity |
Seq1 from |
Seq1 to |
Seq2 from |
Seq2 to |
Strand |
Score1 |
Score2 |
Rel.Score1 |
Rel.Score2 |
Factor |
| M00486* |
0.54 |
362 |
370 |
289 |
297 |
2 |
4.735 |
6.355 |
0.83 |
0.90 |
Pro
only |
| M00690* |
0.55 |
363 |
370 |
290 |
297 |
2 |
8.570 |
5.441 |
0.95 |
0.84 |
Pro
only |
| M00749* |
0.54 |
366 |
372 |
293 |
299 |
2 |
7.219 |
7.219 |
0.86 |
0.86 |
Pro
only |
| M00690* |
0.58 |
405 |
412 |
316 |
323 |
2 |
7.873 |
9.133 |
0.93 |
0.97 |
Pro
only |
| M00747* |
0.59 |
588 |
594 |
326 |
332 |
2 |
5.830 |
5.657 |
0.81 |
0.81 |
Pro
only |
| M00747* |
0.57 |
593 |
599 |
331 |
337 |
2 |
5.565 |
9.609 |
0.80 |
0.95 |
Pro
only |
| M00632* |
0.55 |
594 |
605 |
332 |
343 |
1 |
7.250 |
9.713 |
0.81 |
0.88 |
Pro
only |
| M00286 |
0.52 |
594 |
607 |
332 |
345 |
1 |
8.998 |
9.811 |
0.86 |
0.88 |
GKLF |
| M00499* |
0.61 |
595 |
602 |
333 |
340 |
2 |
7.429 |
6.810 |
0.96 |
0.94 |
Pro
only |
| M00496* |
0.61 |
595 |
602 |
333 |
340 |
2 |
4.719 |
4.623 |
0.83 |
0.83 |
Pro
only |
| M00497* |
0.61 |
595 |
602 |
333 |
340 |
2 |
5.388 |
4.994 |
0.88 |
0.86 |
Pro
only |
| M00747* |
0.57 |
598 |
604 |
336 |
342 |
2 |
5.658 |
5.830 |
0.81 |
0.81 |
Pro
only |
| M00302 |
0.62 |
787 |
798 |
388 |
399 |
1 |
7.314 |
6.750 |
0.82 |
0.80 |
NF-AT |
| M00770* |
0.62 |
787 |
798 |
388 |
399 |
1 |
5.157 |
5.469 |
0.80 |
0.81 |
Pro
only |
| M00500* |
0.63 |
792 |
799 |
393 |
400 |
2 |
7.095 |
6.324 |
0.92 |
0.89 |
Pro
only |
| M00499* |
0.63 |
792 |
799 |
393 |
400 |
2 |
6.203 |
5.692 |
0.91 |
0.89 |
Pro
only |
| M00493* |
0.63 |
792 |
799 |
393 |
400 |
2 |
5.126 |
5.513 |
0.84 |
0.85 |
Pro
only |
| M00496* |
0.63 |
792 |
799 |
393 |
400 |
2 |
6.213 |
5.656 |
0.90 |
0.87 |
Pro
only |
| M00497* |
0.63 |
792 |
799 |
393 |
400 |
2 |
5.404 |
4.624 |
0.88 |
0.84 |
Pro
only |
| M00734* |
0.62 |
792 |
800 |
393 |
401 |
1 |
5.724 |
5.910 |
0.81 |
0.81 |
Pro
only |
| M00415 |
0.62 |
792 |
800 |
393 |
401 |
2 |
8.195 |
5.705 |
0.93 |
0.83 |
AREB6 |
| M00486* |
0.62 |
792 |
800 |
393 |
401 |
1 |
5.919 |
6.022 |
0.88 |
0.89 |
Pro
only |
| M00147 |
0.57 |
793 |
802 |
394 |
403 |
1 |
7.045 |
9.351 |
0.86 |
0.94 |
HSF2 |
| M00147 |
0.57 |
793 |
802 |
394 |
403 |
2 |
6.659 |
9.351 |
0.85 |
0.94 |
HSF2 |
| M00500* |
0.55 |
799 |
806 |
400 |
407 |
1 |
5.976 |
4.672 |
0.88 |
0.83 |
Pro
only |
| M00695* |
0.57 |
973 |
979 |
668 |
674 |
2 |
5.454 |
4.962 |
0.83 |
0.81 |
Pro
only |
| M00428* |
0.55 |
973 |
980 |
668 |
675 |
1 |
5.045 |
4.277 |
0.85 |
0.82 |
Pro
only |
| M00695* |
0.51 |
1064 |
1070 |
1056 |
1062 |
1 |
7.059 |
5.823 |
0.89 |
0.84 |
Pro
only |
| M00803* |
0.50 |
1066 |
1071 |
1058 |
1063 |
1 |
8.271 |
5.501 |
0.97 |
0.84 |
Pro
only |
| M00491* |
0.72 |
1130 |
1142 |
1295 |
1307 |
2 |
8.744 |
13.440 |
0.82 |
0.91 |
Pro
only |
| M00196 |
0.74 |
1131 |
1143 |
1296 |
1308 |
2 |
8.118 |
12.521 |
0.81 |
0.90 |
Sp1 |
| M00008 |
0.75 |
1132 |
1141 |
1297 |
1306 |
2 |
7.794 |
8.629 |
0.86 |
0.89 |
Sp1 |
| M00286 |
0.75 |
1133 |
1146 |
1298 |
1311 |
2 |
9.692 |
9.436 |
0.88 |
0.87 |
GKLF |
| M00649* |
0.76 |
1134 |
1141 |
1299 |
1306 |
2 |
8.587 |
12.480 |
0.87 |
1.00 |
Pro
only |
| M00658* |
0.76 |
1135 |
1142 |
1300 |
1307 |
2 |
10.367 |
6.370 |
0.95 |
0.82 |
Pro
only |
| M00695* |
0.76 |
1135 |
1141 |
1300 |
1306 |
2 |
5.186 |
8.909 |
0.82 |
0.97 |
Pro
only |
| M00083 |
0.76 |
1137 |
1144 |
1302 |
1309 |
2 |
7.612 |
8.013 |
0.87 |
0.89 |
MZF1 |
| M00278 |
0.72 |
1139 |
1147 |
1304 |
1312 |
2 |
5.472 |
9.912 |
0.81 |
0.95 |
Lmo2 complex |