Conreal job VZY9Lo completed

CONREAL

CONREAL ALIGNMENT

                  10                                                                                          
seq1      gctatttcttaatcta------------------------------------------------------------------------------------
             ||   | ||                                                                                        
seq2      agaatcaataaaatatttgaagtattttttaagactgtacagctggagctccaggtttaaattagagctctgccatttactagatatggttggtcaagaa
                  10        20        30        40        50        60        70        80        90       100

                                     20        30        40        50        60        70        80        90 
seq1      -------------------------TAACATGGAAAACACACACACacacacacacacacacacacacacatgcacgcgcgcgcacacacacacacatac
                                   ||| |||| ||  | | |   | |   ||||  | | |       |   |                         
seq2      aattaaccttgtatttcatcgtccaTAAAATGGGAATAAAATAATAagatctacactaatagatttgatgaaagaattt---------------------
                 110       120       130       140       150       160       170                              

                100       110       120       130       140       150       160       170       180       190 
seq1      tcactcactcaccaggcacacactaggcctatgggcaAAAGAGATAATTTATGAATAGTTCTTGCacaacacctactacgtAATAAAAGATCCATCACAT
                                               || |||||||| ||||   |||||||   |     |        |  || |  | ||||||||
seq2      -------------------------------------AATGAGATAATCTATGCGAAGTTCTTAGtctggcacctggcac-ATGAATAAGTGCATCACAT
                                             180       190       200       210       220        230       240 

                200       210       220       230       240       250       260       270       280       290 
seq1      AATGTTATgagatgtgttactatggccattgttcgctttctgatttttacaaactttcctaatCTGAAAGTGGACCTTTCAAAAcCCTTTCTGTGagaac
          |||| | | || | |  |  |   |      ||  ||||| | |                      |||||  | ||||||||  |||| |||||    |
seq2      AATGATGTtagctattattattgtggttgcattatctttccgttc------------------AAAAAAGTACAACTTTCAAAG-CCTTGCTGTGttggc
                250       260       270       280                         290       300        310       320  

                300       310         320       330       340       350       360         370       380       
seq1      aacccgcagttagtaagcta--TCTTTTTCTTTCAATTTTGTTTTCCAAAGGCTCTGTAGTAAACTGTTgaaaacag--CATCTCCTTtagTACCATTTA
           ||| | ||||    |         || ||||||||| ||  |||| |||| | | |||  ||||  ||  |||     | |||||  | | |  | |||
seq2      gacctgtagtttaataatctatCGCTTCTCTTTCAATCTTAATTTCTAAAGACACAGTAACAAACCATTccaaatgaagCGTCTCCCCttgCAATACTTA
               330       340       350       360       370       380       390       400       410       420  

          390       400                          410       420       430       440       450       460       4
seq1      ATCCTGAGTCACTTGTTtt-------------------CTCACTAAAGTAACTGaggagaaacaaaaggaaaaaggaaagggaggaaggaagaaggaagg
          | | |||||||    || |                    |||||||||||| ||         ||||  | |                            
seq2      ACCTTGAGTCAACAATTcttgtaattattaaatattcaTTCACTAAAGTAATTGttttttttaaaaaatagagg--------------------------
               430       440       450       460       470       480       490                                

          70       480       490       500       510       520       530       540       550                 5
seq1      aaagaaagaagagaaaggaacggaacagaaaggaaaagaaaagaaaagagaaaagaagagaagagaaaaactAGCTAAGacaa----------TGGGATT
                                                                                   | || |||||             ||| 
seq2      ------------------------------------------------------------------------TGATAGGacaatggcctaactACAGATC
                                                                                   500       510       520    

          60       570       580       590       600       610       620       630       640       650       6
seq1      GTAATTAAACTTTTTTGGTtgttggttctatttccctgaggcgaggtaggggaaaagaaccaagtgaagtctatccgaccacgcggctcctgagccagga
          | ||||||||||| ||  |    ||                   | |  |                    || ||||||   |     |    |      
seq2      GCAATTAAACTTTATTTCTctaaggcaggcagggtgaattctttgctccgaacctcccggactcctctccctctccgactttgtataacagagggagctc
             530       540       550       560       570       580       590       600       610       620    

          60           670       680       690       700       710       720       730       740       750    
seq1      ccctctccact----GTGCGCGGtgcaacgagggTACCCGgacagtgctggtgagcttgctgcggactggggagccgggcacagGGCAGCTACTgcaggt
          |   | |        | ||| |||    ||   || |||||      | |||||||                              ||||   | | || 
seq2      cgagccctctctggcGCGCGAGGtatttcgtctgTCCCCGggggtgccaggtgagc----------------------------CCCAGCGGATccggga
             630       640       650       660       670       680                                   690      

             760       770                                                                       780       790
seq1      tgctcagCGGCATCCgaga----------------------------------------------------------------CTCCCGgtgcctcaggg
                  |  | | | ||                                                                ||||||           
seq2      g------GGTAAGCTgggactcctcgcgagcagtagctgcagggtaccaagcttcgccctctgcgtccccgcgccttcgcggtCTCCCG-----------
                 700       710       720       730       740       750       760       770                    

                 800       810       820                     830       840       850       860        870     
seq1      actctggCCAGTACCcagacaggggacgcaccaggct--------------CGATCGgtCCAACCTCTGGGAAGatccccgcccttc-AGCGCGCTCCCG
                 ||||| |     | |||  | ||   |                   ||| | | ||| ||||||    |  |||  ||     ||| ||||||
seq2      -------CCAGTGCAggtccggggcccccaggcgagcggacaaggttggccTAATCTgcCAAACTTCTGGGGCAtttaccgtgctctgGCCGCCCTCCCG
               780       790       800       810       820       830       840       850       860       870  

            880       890       900               910       920       930       940       950       960       
seq1      GGTCtcccagcctggactCGGTGCGCggctct--------CCTCCCCGAGGCTCCGGAAGGGAAGGAGGCGTGTCCGGAGCTGGCGGGCGGgcgggaggG
            ||| ||          | | || |    ||        ||| |||  |||||||||||||||||||||||||||||||| |||||||||        |
seq2      ATTCttccct--------CCGCGCCCttgcctgcttctcgCCTACCCCGGGCTCCGGAAGGGAAGGAGGCGTGTCCGGAGCAGGCGGGCGG--------G
               880               890       900       910       920       930       940       950              

          970       980       990      1000 
seq1      AGCTGTATAAAAAGCGCtggcggcgcagcagcc-
          | ||||||||||    | |  |         |  
seq2      AACTGTATAAAAGCGCCggcggctcagcagccgg
           960       970       980       990

CONREAL ALIGNED HITS

Matrix Identity Seq1 from Seq1 to Seq2 from Seq2 to Strand Score1 Score2 Rel.Score1 Rel.Score2 Factor Found by:
C = CONREAL
L = LAGAN
M = MAVID
B = BLASTZ
M00770* 57.14 17 28 126 137 1 5.448 5.571 0.81 0.81 Pro only C L M
MA0095 61.11 20 25 129 134 2 6.225 5.236 0.89 0.84 Yin-Yang C L M
M00930* 58.54 20 30 129 139 2 9.401 8.299 0.87 0.84 Pro only C L M
M00493* 55.26 22 29 131 138 2 6.502 5.059 0.90 0.83 Pro only C L M
M00494* 55.26 22 29 131 138 2 6.539 4.964 0.89 0.82 Pro only C L M
MA0041 54.76 26 37 135 146 2 6.932 10.457 0.81 0.88 HFH-2 C L M
M00148 51.35 129 135 180 186 1 5.573 4.316 0.86 0.81 SRY C only
MA0033 55.26 130 137 181 188 1 5.980 5.530 0.88 0.86 FREAC-7 C only
M00128 53.49 130 142 181 193 1 6.462 6.704 0.81 0.82 GATA-1 C only
M00349 55.00 131 140 182 191 1 8.418 7.109 0.85 0.82 GATA-2 C only
M00348 55.00 131 140 182 191 1 8.582 6.682 0.86 0.80 GATA-2 C only
M00350 55.00 131 140 182 191 1 11.282 8.697 0.93 0.86 GATA-3 C only
M00462* 55.00 131 140 182 191 1 7.409 6.769 0.92 0.90 Pro only C only
M00076 55.00 131 140 182 191 1 5.060 5.888 0.83 0.87 GATA-2 C only
MA0109 57.89 132 139 183 190 2 8.621 8.621 0.97 0.97 RUSH1-alfa C L M
M00278 56.41 132 140 183 191 1 5.406 7.381 0.81 0.87 Lmo2 complex C L M
M00077 56.41 132 140 183 191 1 6.914 6.914 0.87 0.87 GATA-3 C L M
M00789* 59.46 133 139 184 190 1 8.181 8.181 0.93 0.93 Pro only C L M
MA0037 58.33 133 138 184 189 1 7.189 7.189 0.95 0.95 GATA-3 C L M
MA0035 58.33 133 138 184 189 1 4.460 4.460 0.86 0.86 GATA-1 C L M
MA0036 57.14 133 137 184 188 1 6.232 6.232 0.98 0.98 GATA-2 C L M
M00630* 56.41 133 141 184 192 2 5.141 5.617 0.80 0.82 Pro only C L M
M00203 56.10 133 143 184 194 1 7.017 6.607 0.83 0.82 GATA-X C L M
MA0063 59.46 135 141 186 192 1 7.419 5.430 0.92 0.84 Nkx C L M
M00396 59.46 135 141 186 192 1 5.086 4.306 0.88 0.84 En-1 C L M
M00465* 56.10 135 145 186 196 2 12.677 14.155 0.90 0.94 Pro only C L M
MA0075 62.86 136 140 187 191 2 9.124 5.937 1.00 0.87 S8 C L M
M00101 59.46 138 144 189 195 1 7.364 3.116 1.00 0.82 CdxA C L M
M00253 57.89 138 145 189 196 2 4.254 2.804 0.87 0.81 cap C L M
M00159 53.49 139 151 190 202 1 5.230 6.475 0.80 0.84 C/EBP C L M
MA0033 57.89 141 148 192 199 2 6.565 5.684 0.90 0.86 FREAC-7 C L M
M00396 56.76 146 152 197 203 1 4.748 4.132 0.87 0.83 En-1 C L M
M00500* 55.26 147 154 198 205 1 4.373 5.001 0.82 0.84 Pro only C L M
M00499* 55.26 147 154 198 205 1 6.553 6.898 0.92 0.94 Pro only C L M
M00493* 55.26 147 154 198 205 1 6.242 5.765 0.89 0.86 Pro only C L M
M00494* 55.26 147 154 198 205 1 5.710 4.907 0.86 0.82 Pro only C L M
M00497* 55.26 147 154 198 205 1 4.416 4.029 0.83 0.81 Pro only C L M
M00960* 52.50 147 156 198 207 2 5.574 5.721 0.80 0.81 Pro only C M
MA0080 52.78 149 154 200 205 2 4.249 4.249 0.81 0.81 SPI-1 C L M
M00498* 50.00 173 180 223 230 2 4.829 4.668 0.85 0.85 Pro only C M
M00967* 56.41 178 186 228 236 1 7.059 5.595 0.86 0.81 Pro only C L M
M00076 57.50 181 190 231 240 2 5.163 4.325 0.84 0.80 GATA-2 C L M
M00075 57.50 181 190 231 240 2 5.767 4.669 0.86 0.82 GATA-1 C L M
M00162 56.82 182 195 232 245 2 8.212 10.772 0.86 0.93 Oct-1 C L M
M00396 62.16 183 189 233 239 2 5.558 4.504 0.91 0.85 En-1 C L M
MA0035 61.11 183 188 233 238 2 6.713 6.294 0.98 0.96 GATA-1 C L M
MA0067 60.53 183 190 233 240 2 4.744 4.744 0.83 0.83 Pax-2 C L M
M00253 60.53 183 190 233 240 1 3.011 3.497 0.82 0.84 cap C L M
MA0025 58.54 183 193 233 243 2 8.971 9.533 0.84 0.86 E4BP4 C L M
M00704* 63.89 184 189 234 239 2 5.285 5.285 0.83 0.83 Pro only C L M
M00801* 63.89 184 189 234 239 1 5.311 5.311 0.84 0.84 Pro only C L M
MA0089 63.89 184 189 234 239 1 4.292 4.292 0.80 0.80 TCF11-MafG C L M
MA0067 63.16 184 191 234 241 1 4.221 4.221 0.81 0.81 Pax-2 C L M
MA0036 62.86 184 188 234 238 2 5.105 5.105 0.91 0.91 GATA-2 C L M
M00220 60.98 184 194 234 244 1 8.532 8.532 0.81 0.81 SREBP-1 C L M
M00045 59.52 184 195 234 245 2 11.157 11.157 0.88 0.88 E4BP4 C L M
MA0043 59.52 184 195 234 245 1 7.233 7.233 0.81 0.81 HLF C L M
MA0043 59.52 184 195 234 245 2 6.879 6.879 0.80 0.80 HLF C L M
M00624* 64.86 185 191 235 241 1 5.096 5.096 0.84 0.84 Pro only C L M
M00751* 63.89 185 190 235 240 2 6.346 6.346 0.83 0.83 Pro only C L M
M00271 63.89 185 190 235 240 2 5.943 5.943 0.85 0.85 AML-1a C L M
M00731* 63.16 185 192 235 242 1 6.725 6.725 0.82 0.82 Pro only C L M
MA0033 63.16 185 192 235 242 1 6.560 6.560 0.90 0.90 FREAC-7 C L M
M00228 62.50 185 194 235 244 1 7.873 7.873 0.83 0.83 VBP C L M
M00228 62.50 185 194 235 244 2 7.500 7.500 0.82 0.82 VBP C L M
M00260 62.50 185 194 235 244 1 8.298 8.298 0.85 0.85 HLF C L M
M00260 62.50 185 194 235 244 2 8.414 8.414 0.85 0.85 HLF C L M
M00220 60.98 185 195 235 245 2 8.252 8.252 0.81 0.81 SREBP-1 C L M
M00040 60.53 186 193 236 243 1 6.602 6.602 0.80 0.80 CRE-BP1 C L M
M01029* 60.53 186 193 236 243 2 7.423 7.423 0.84 0.84 Pro only C L M
M00253 60.53 186 193 236 243 1 3.414 3.414 0.83 0.83 cap C L M
M00240 62.16 187 193 237 243 2 6.437 6.437 0.83 0.83 Nkx2-5 C L M
MA0063 62.16 187 193 237 243 2 4.731 4.731 0.82 0.82 Nkx C L M
M00394 61.54 187 195 237 245 2 5.622 5.622 0.82 0.82 Msx-1 C L M
M00395 61.54 187 195 237 245 2 4.725 4.725 0.86 0.86 HOXA3 C L M
M00137 58.14 187 199 237 249 1 7.939 10.063 0.88 0.96 Oct-1 C L
MA0036 65.71 188 192 238 242 1 3.363 3.363 0.81 0.81 GATA-2 C L M
M00253 63.16 188 195 238 245 1 3.125 3.125 0.82 0.82 cap C L M
M00101 62.16 189 195 239 245 1 4.952 4.952 0.90 0.90 CdxA C L M
M00101 62.16 189 195 239 245 2 4.952 4.952 0.90 0.90 CdxA C L M
M00100 62.16 189 195 239 245 1 4.356 4.356 0.82 0.82 CdxA C L M
M00100 62.16 189 195 239 245 2 5.825 5.825 0.90 0.90 CdxA C L M
MA0078 61.54 189 197 239 247 2 5.720 6.120 0.81 0.82 SOX17 C L
M00395 61.54 189 197 239 247 1 6.061 4.445 0.93 0.84 HOXA3 C L
M00253 60.53 189 196 239 246 2 3.859 5.265 0.85 0.91 cap C L
M00396 62.16 190 196 240 246 1 4.748 4.108 0.87 0.83 En-1 C L
MA0075 65.71 191 195 241 245 2 5.343 5.343 0.84 0.84 S8 C L M
M00486* 61.54 255 263 287 295 1 6.173 5.874 0.89 0.88 Pro only C L
MA0103 52.78 264 269 296 301 1 5.313 4.388 0.84 0.81 deltaEF1 C L M
M00805* 50.00 270 275 302 307 1 5.940 9.662 0.84 1.00 Pro only C L
MA0039 55.00 277 286 308 317 2 7.746 5.827 0.88 0.83 Gklf C M
M00658* 55.26 278 285 309 316 2 6.105 6.105 0.81 0.81 Pro only C M
MA0081 56.76 279 285 310 316 2 5.356 4.704 0.83 0.80 SPI-B C L M
MA0039 50.00 312 321 345 354 2 5.711 5.588 0.82 0.82 Gklf C only
M00972* 53.66 313 323 346 356 2 9.855 9.174 0.87 0.85 Pro only C only
MA0039 52.50 313 322 346 355 2 8.814 6.118 0.92 0.84 Gklf C only
M00772* 57.78 315 329 348 362 1 13.151 9.704 0.90 0.82 Pro only C L
M00747* 54.05 315 321 348 354 1 5.565 9.609 0.80 0.95 Pro only C L
M00148 56.76 316 322 349 355 2 7.723 5.573 0.95 0.86 SRY C L
M00486* 58.97 317 325 350 358 2 4.878 4.718 0.84 0.83 Pro only C L
M00500* 60.53 318 325 351 358 1 4.387 4.387 0.82 0.82 Pro only C L M
M00498* 60.53 318 325 351 358 1 5.233 5.233 0.87 0.87 Pro only C L M
MA0102 59.52 318 329 351 362 1 6.161 7.367 0.80 0.84 cEBP C L M
M00100 59.46 319 325 352 358 1 4.197 4.197 0.81 0.81 CdxA C L M
M00972* 58.54 319 329 352 362 2 13.060 8.417 0.95 0.83 Pro only C L M
M00805* 58.33 319 324 352 357 2 5.716 5.716 0.83 0.83 Pro only C L M
M00314* 60.53 320 327 353 360 1 4.759 4.927 0.82 0.83 Pro only C L M
M00313* 60.53 320 327 353 360 1 5.049 5.049 0.84 0.84 Pro only C L M
M00315* 60.53 320 327 353 360 1 4.654 4.803 0.82 0.83 Pro only C L M
M00100 59.46 320 326 353 359 2 4.080 4.080 0.81 0.81 CdxA C L M
M00253 60.53 322 329 355 362 1 4.692 5.372 0.89 0.92 cap C L M
MA0041 61.90 323 334 356 367 1 8.036 6.766 0.83 0.80 HFH-2 C L M
MA0047 61.90 323 334 356 367 1 6.920 7.433 0.80 0.81 HNF-3beta C L M
M00130 61.90 323 334 356 367 1 7.576 7.366 0.83 0.82 FOXD3 C L M
M00109 70.45 329 342 362 375 2 6.972 8.523 0.83 0.87 C/EBPbeta C L M
M00500* 73.68 330 337 363 370 1 6.619 6.011 0.90 0.88 Pro only C L M
M00498* 73.68 330 337 363 370 1 7.526 4.563 0.95 0.84 Pro only C L M
M00499* 73.68 330 337 363 370 1 7.420 7.769 0.96 0.98 Pro only C L M
M00493* 73.68 330 337 363 370 1 6.502 7.410 0.90 0.94 Pro only C L M
M00496* 73.68 330 337 363 370 1 7.486 6.071 0.95 0.89 Pro only C L M
M00494* 73.68 330 337 363 370 1 6.539 6.468 0.89 0.89 Pro only C L M
M00750* 72.97 330 336 363 369 2 8.254 6.906 0.94 0.89 Pro only C L M
M00101 72.97 331 337 364 370 1 4.356 6.844 0.87 0.98 CdxA C L M
M00912* 71.43 331 342 364 375 1 7.071 7.759 0.84 0.86 Pro only C L M
M00770* 71.43 331 342 364 375 2 8.098 7.459 0.90 0.88 Pro only C L M
M00486* 71.79 334 342 367 375 1 5.052 6.172 0.85 0.89 Pro only C L M
MA0032 65.79 341 348 374 381 1 6.086 6.238 0.92 0.93 FREAC-3 C L M
M00624* 56.76 348 354 381 387 1 5.144 5.338 0.84 0.85 Pro only C L M
M00486* 56.41 348 356 381 389 1 6.693 7.263 0.92 0.94 Pro only C L M
MA0040 56.10 348 358 381 391 2 8.119 7.800 0.81 0.80 HFH-1 C L M
M00963* 51.28 367 375 402 410 1 8.027 5.560 0.91 0.82 Pro only C L M
M00485* 62.50 379 388 414 423 2 7.182 9.179 0.81 0.86 Pro only C L M
M00240 62.16 382 388 417 423 2 6.437 7.967 0.83 0.90 Nkx2-5 C L M
MA0063 62.16 382 388 417 423 2 5.897 6.870 0.86 0.90 Nkx C L M
M00711* 55.81 386 398 421 433 1 8.072 8.906 0.83 0.86 Pro only C L M
M00924* 54.76 387 398 422 433 2 9.318 12.457 0.90 1.00 Pro only C L M
M00983* 53.66 389 399 424 434 1 10.802 9.142 0.91 0.86 Pro only C L
M00514* 52.38 389 400 424 435 2 6.798 9.036 0.80 0.87 Pro only C L
M00517* 51.16 389 401 424 436 1 7.615 10.398 0.81 0.89 Pro only C L
M00490* 53.66 390 400 425 435 1 9.630 10.603 0.86 0.88 Pro only C L
M00173 53.66 390 400 425 435 2 10.658 6.527 0.93 0.80 AP-1 C L
M00188 53.66 390 400 425 435 2 11.841 6.965 0.96 0.81 AP-1 C L
M00172 53.66 390 400 425 435 2 10.025 6.429 0.92 0.80 AP-1 C L
M00174 53.66 390 400 425 435 2 11.069 9.063 0.95 0.89 AP-1 C L
M00199 56.41 391 399 426 434 1 9.767 8.969 0.91 0.89 AP-1 C L
M00199 56.41 391 399 426 434 2 11.446 8.636 0.97 0.87 AP-1 C L
M00925* 56.41 391 399 426 434 1 7.922 7.521 0.88 0.86 Pro only C L
M00925* 56.41 391 399 426 434 2 11.012 9.867 0.98 0.94 Pro only C L
MA0099 55.26 391 398 426 433 1 9.681 8.178 0.93 0.88 c-FOS C L M
M00926* 55.26 391 398 426 433 2 8.672 7.520 0.91 0.87 Pro only C L M
MA0099 55.26 392 399 427 434 2 11.255 7.669 0.98 0.86 c-FOS C L
M00926* 55.26 392 399 427 434 1 10.797 9.690 0.98 0.94 Pro only C L
M00711* 53.49 392 404 427 439 2 8.974 6.959 0.86 0.80 Pro only C L
MA0089 55.56 395 400 430 435 2 5.481 4.307 0.86 0.80 TCF11-MafG C L
M00253 52.63 396 403 431 438 1 5.751 3.068 0.93 0.82 cap C L
M00622* 51.16 407 419 461 473 1 8.147 7.338 0.83 0.81 Pro only C only
M00253 50.00 408 415 462 469 1 4.050 4.050 0.86 0.86 cap C L M
M00794* 54.76 409 420 463 474 1 6.121 5.999 0.81 0.80 Pro only C L M
M00240 51.35 409 415 463 469 2 6.437 6.437 0.83 0.83 Nkx2-5 C L M
MA0063 51.35 409 415 463 469 2 4.731 4.731 0.82 0.82 Nkx C L M
M00318* 50.00 409 416 463 470 1 8.578 8.578 0.87 0.87 Pro only C L M
M00486* 53.85 410 418 464 472 1 6.667 6.667 0.91 0.91 Pro only C L M
M00690* 52.63 410 417 464 471 1 5.635 5.635 0.84 0.84 Pro only C L M
MA0032 55.26 411 418 465 472 1 6.138 6.138 0.93 0.93 FREAC-3 C L M
M00148 56.76 413 419 467 473 1 6.998 6.998 0.92 0.92 SRY C L M
MA0075 54.29 414 418 468 472 1 4.766 4.766 0.82 0.82 S8 C L M
M00394 53.85 414 422 468 476 1 6.139 7.164 0.85 0.90 Msx-1 C L
M00496* 55.26 415 422 469 476 2 4.615 4.886 0.83 0.84 Pro only C L
M00789* 51.35 541 547 497 503 1 4.701 9.197 0.81 0.97 Pro only C only
M00076 52.50 552 561 518 527 1 5.169 4.386 0.84 0.81 GATA-2 C only
MA0037 55.56 554 559 520 525 1 5.249 4.609 0.87 0.84 GATA-3 C only
MA0035 55.56 554 559 520 525 1 5.795 5.144 0.93 0.89 GATA-1 C only
MA0036 54.29 554 558 520 524 1 4.873 4.628 0.90 0.88 GATA-2 C only
M00099 50.00 554 569 520 535 1 5.310 6.913 0.80 0.84 S8 C only
M00137 51.16 556 568 522 534 1 7.046 5.599 0.85 0.80 Oct-1 C L M
MA0075 54.29 560 564 526 530 2 9.124 4.766 1.00 0.82 S8 C L M
M00241 52.63 560 567 526 533 2 6.879 8.070 0.83 0.88 Nkx2-5 C L M
M00498* 52.63 560 567 526 533 1 3.965 4.829 0.82 0.85 Pro only C L M
MA0063 51.35 560 566 526 532 2 7.328 9.317 0.92 1.00 Nkx C L M
MA0075 54.29 561 565 527 531 1 9.124 9.124 1.00 1.00 S8 C L M
M00101 54.05 561 567 527 533 1 4.423 4.423 0.88 0.88 CdxA C L M
M00101 54.05 561 567 527 533 2 4.502 4.502 0.88 0.88 CdxA C L M
M00100 54.05 561 567 527 533 1 4.701 4.701 0.84 0.84 CdxA C L M
M00630* 53.85 561 569 527 535 2 5.260 5.260 0.81 0.81 Pro only C L M
M00129 50.00 561 572 527 538 2 8.945 10.185 0.81 0.84 HFH-1 C only
MA0041 50.00 561 572 527 538 2 8.686 8.141 0.84 0.83 HFH-2 C only
M00130 50.00 561 572 527 538 2 8.999 8.508 0.86 0.85 FOXD3 C only
M00100 56.76 562 568 528 534 1 4.007 4.007 0.80 0.80 CdxA C L M
M00486* 53.85 562 570 528 536 1 6.922 6.922 0.93 0.93 Pro only C L M
MA0040 51.22 562 572 528 538 2 8.147 8.818 0.81 0.83 HFH-1 C only
M00486* 51.28 566 574 532 540 2 5.328 6.483 0.86 0.91 Pro only C only
M00101 54.05 568 574 534 540 2 2.902 4.343 0.81 0.87 CdxA C only
M00318* 52.63 568 575 534 541 2 8.578 11.394 0.87 0.96 Pro only C only
M00096 51.28 569 577 535 543 2 7.434 6.112 0.86 0.82 Pbx-1 C only
M00716* 55.26 670 677 640 647 1 7.926 7.102 0.91 0.88 Pro only C L M
M00986* 55.56 689 694 659 664 2 6.912 7.524 0.95 0.98 Pro only C L M
M00175 52.50 739 748 681 690 1 6.386 6.166 0.81 0.80 AP-4 C only
M00253 52.63 740 747 682 689 1 4.136 2.813 0.87 0.81 cap C only
M00644* 51.35 740 746 682 688 2 6.451 8.098 0.85 0.92 Pro only C only
M00497* 50.00 762 769 698 705 2 4.981 4.223 0.86 0.82 Pro only C only
MA0098 52.78 774 779 774 779 1 3.822 3.822 0.82 0.82 c-ETS C B
M00986* 52.78 774 779 774 779 2 7.492 7.492 0.98 0.98 Pro only C B
M00253 57.89 798 805 780 787 1 4.854 3.467 0.90 0.84 cap C only
MA0037 58.33 828 833 824 829 2 3.853 6.224 0.81 0.91 GATA-3 C L M
MA0035 58.33 828 833 824 829 2 5.238 4.006 0.90 0.83 GATA-1 C L M
MA0036 60.00 829 833 825 829 2 4.628 4.454 0.88 0.87 GATA-2 C L M
M00532* 54.76 836 847 832 843 1 8.745 9.794 0.82 0.84 Pro only C L M
M00777* 53.49 836 848 832 844 1 7.057 10.256 0.82 0.90 Pro only C L M
M00396 56.76 837 843 833 839 2 3.902 4.132 0.82 0.83 En-1 C L M
M00253 60.53 839 846 835 842 2 3.479 3.982 0.84 0.86 cap C L M
M00141 53.85 842 850 838 846 1 9.768 5.992 0.92 0.80 Lyf-1 C L M
MA0056 55.56 844 849 840 845 1 4.846 4.989 0.81 0.81 MZF_1-4 C L M
M00986* 55.56 844 849 840 845 1 5.633 5.530 0.90 0.89 Pro only C L M
M00803* 55.56 864 869 861 866 1 5.195 4.573 0.83 0.80 Pro only C only
M00803* 55.56 864 869 861 866 2 5.517 6.243 0.85 0.88 Pro only C only
M00649* 55.26 868 875 865 872 2 6.721 9.124 0.81 0.89 Pro only C L M
MA0098 55.56 870 875 867 872 1 3.822 3.822 0.82 0.82 c-ETS C L M
M00986* 55.56 870 875 867 872 2 7.492 7.492 0.98 0.98 Pro only C L M
MA0028 52.50 870 879 867 876 2 6.971 5.694 0.84 0.80 Elk-1 C L M
M00716* 50.00 894 901 883 890 2 5.974 10.047 0.83 1.00 Pro only C only
M00803* 52.78 895 900 884 889 1 4.808 5.517 0.81 0.85 Pro only C only
M00915* 72.09 908 920 905 917 1 10.787 9.245 0.91 0.87 Pro only C L M
M00695* 67.57 908 914 905 911 2 8.909 4.962 0.97 0.81 Pro only C L M
M00189 73.81 909 920 906 917 1 9.304 6.442 0.88 0.80 AP-2 C L M
M00189 73.81 909 920 906 917 2 7.095 6.626 0.82 0.81 AP-2 C L M
M00986* 72.22 910 915 907 912 2 7.524 5.430 0.98 0.89 Pro only C L M
M00470* 76.92 911 919 908 916 1 5.291 5.267 0.81 0.81 Pro only C L M
M00470* 76.92 911 919 908 916 2 10.580 9.574 0.98 0.95 Pro only C L M
M00469* 76.92 911 919 908 916 1 4.313 4.490 0.80 0.81 Pro only C L M
M00469* 76.92 911 919 908 916 2 9.709 8.513 0.98 0.94 Pro only C L M
MA0003 76.92 911 919 908 916 1 4.313 4.490 0.80 0.81 AP2alpha C L M
MA0003 76.92 911 919 908 916 2 9.709 8.513 0.98 0.94 AP2alpha C L M
M00915* 86.05 916 928 913 925 2 6.855 7.207 0.80 0.81 Pro only C L M
M00025 86.36 917 930 914 927 1 9.351 9.351 0.86 0.86 Elk-1 C L M
M00074 88.37 918 930 915 927 1 7.167 7.167 0.84 0.84 c-Ets-1(p54) C L M
MA0028 87.50 918 927 915 924 1 10.199 10.199 0.95 0.95 Elk-1 C L M
M00341* 90.48 920 931 917 928 1 8.635 8.635 0.80 0.80 Pro only C L M
M00108 90.00 920 929 917 926 1 9.583 9.583 0.86 0.86 NRF-2 C L M
MA0062 90.00 920 929 917 926 1 9.583 9.583 0.86 0.86 NRF-2 C L M
M00032 90.00 920 929 917 926 1 7.705 7.705 0.86 0.86 c-Ets-1(p54) C L M
MA0076 89.74 920 928 917 925 1 7.836 7.836 0.81 0.81 SAP-1 C L M
M00658* 89.47 920 927 917 924 1 7.753 7.753 0.87 0.87 Pro only C L M
MA0081 89.19 920 926 917 923 1 8.238 8.238 0.92 0.92 SPI-B C L M
M00771* 90.48 921 932 918 929 2 8.089 8.089 0.82 0.82 Pro only C L M
M00743* 89.47 921 928 918 925 1 8.077 8.077 0.88 0.88 Pro only C L M
M00971* 89.47 921 928 918 925 2 7.996 7.996 0.89 0.89 Pro only C L M
M00492* 89.47 922 929 919 926 2 8.448 8.448 0.91 0.91 Pro only C L M
M00500* 89.47 922 929 919 926 2 5.902 5.902 0.87 0.87 Pro only C L M
M00498* 89.47 922 929 919 926 2 4.668 4.668 0.85 0.85 Pro only C L M
M00499* 89.47 922 929 919 926 2 5.727 5.727 0.89 0.89 Pro only C L M
M00496* 89.47 922 929 919 926 2 5.438 5.438 0.86 0.86 Pro only C L M
M00497* 89.47 922 929 919 926 2 6.977 6.977 0.95 0.95 Pro only C L M
M00655* 89.19 922 928 919 925 2 6.124 6.124 0.84 0.84 Pro only C L M
MA0080 88.89 922 927 919 924 1 8.711 8.711 1.00 1.00 SPI-1 C L M
MA0098 88.89 922 927 919 924 2 7.797 7.797 1.00 1.00 c-ETS C L M
M00972* 92.68 923 933 920 930 1 7.274 7.274 0.80 0.80 Pro only C L M
MA0057 92.50 923 932 920 929 1 6.376 6.376 0.82 0.82 MZF_5-13 C L M
MA0028 92.50 923 932 920 929 1 5.775 5.775 0.80 0.80 Elk-1 C L M
M00704* 91.67 923 928 920 925 1 5.117 5.117 0.82 0.82 Pro only C L M
M00087 90.48 923 934 920 931 1 6.383 6.383 0.81 0.81 Ik-2 C L M
MA0039 92.50 924 933 921 930 1 8.899 8.899 0.92 0.92 Gklf C L M
M00720* 92.31 925 933 922 930 1 6.353 6.353 0.80 0.80 Pro only C L M
M00963* 92.31 925 933 922 930 2 5.121 5.121 0.81 0.81 Pro only C L M
M00658* 92.11 925 932 922 929 1 6.693 6.693 0.83 0.83 Pro only C L M
MA0014 92.00 925 944 922 941 1 9.750 9.750 0.82 0.82 Bsap C L M
M00747* 91.89 925 931 922 928 2 7.250 7.250 0.87 0.87 Pro only C L M
MA0081 91.89 925 931 922 928 1 6.493 6.493 0.86 0.86 SPI-B C L M
M00255 90.91 925 938 922 935 1 6.706 6.706 0.82 0.82 GC box C L M
MA0039 90.00 925 934 922 931 1 5.323 5.323 0.81 0.81 Gklf C L M
M00649* 92.11 926 933 923 930 1 7.389 7.389 0.83 0.83 Pro only C L M
M00971* 92.11 926 933 923 930 2 6.109 6.109 0.83 0.83 Pro only C L M
MA0098 91.67 926 931 923 928 2 3.658 3.658 0.81 0.81 c-ETS C L M
M00986* 91.67 926 931 923 928 1 5.392 5.392 0.88 0.88 Pro only C L M
MA0111 90.24 926 936 923 933 1 7.506 7.506 0.81 0.81 Spz1 C L M
M00695* 94.59 927 933 924 930 1 4.962 4.962 0.81 0.81 Pro only C L M
MA0080 94.44 927 932 924 929 1 8.579 8.579 0.99 0.99 SPI-1 C L M
MA0098 94.44 927 932 924 929 2 5.777 5.777 0.91 0.91 c-ETS C L M
M00492* 92.11 927 934 924 931 2 6.570 6.570 0.84 0.84 Pro only C L M
M00500* 92.11 927 934 924 931 2 7.634 7.634 0.93 0.93 Pro only C L M
M00498* 92.11 927 934 924 931 2 3.804 3.804 0.81 0.81 Pro only C L M
M00499* 92.11 927 934 924 931 2 4.828 4.828 0.85 0.85 Pro only C L M
M00496* 92.11 927 934 924 931 2 3.932 3.932 0.80 0.80 Pro only C L M
M00497* 92.11 927 934 924 931 2 6.946 6.946 0.95 0.95 Pro only C L M
M00704* 94.44 928 933 925 930 1 5.117 5.117 0.82 0.82 Pro only C L M
M00235 93.48 928 943 925 940 1 9.133 9.133 0.85 0.85 AhR/Arnt C L M
M00706* 92.31 928 936 925 933 1 8.928 8.928 0.90 0.90 Pro only C L M
M00720* 92.31 929 937 926 934 1 6.555 6.555 0.81 0.81 Pro only C L M
M00313* 92.11 929 936 926 933 2 5.108 5.108 0.84 0.84 Pro only C L M
M00315* 92.11 929 936 926 933 2 5.049 5.049 0.84 0.84 Pro only C L M
M00963* 92.31 930 938 927 935 2 6.672 6.672 0.86 0.86 Pro only C L M
M00971* 92.11 930 937 927 934 2 5.207 5.207 0.80 0.80 Pro only C L M
M00695* 91.89 930 936 927 933 1 5.186 5.186 0.82 0.82 Pro only C L M
MA0103 91.67 930 935 927 932 2 5.159 5.159 0.84 0.84 deltaEF1 C L M
M00255 95.45 931 944 928 941 1 11.408 11.408 0.90 0.90 GC box C L M
M00196 95.35 931 943 928 940 1 8.906 8.906 0.82 0.82 Sp1 C L M
M00932* 95.35 931 943 928 940 1 8.314 8.314 0.81 0.81 Pro only C L M
MA0098 94.44 931 936 928 933 2 3.674 3.674 0.81 0.81 c-ETS C L M
MA0057 97.50 932 941 929 938 1 6.086 6.086 0.81 0.81 MZF_5-13 C L M
M00778* 97.56 933 943 930 940 1 7.000 7.000 0.81 0.81 Pro only C L M
M00008 97.50 933 942 930 939 1 6.806 6.806 0.82 0.82 Sp1 C L M
M00695* 97.30 933 939 930 936 1 5.555 5.555 0.83 0.83 Pro only C L M
M00272 97.50 934 943 931 940 1 9.479 9.479 0.92 0.92 p53 C L M
M00272 97.50 934 943 931 940 2 6.924 6.924 0.86 0.86 p53 C L M
M00761* 97.50 934 943 931 940 1 8.491 8.491 0.90 0.90 Pro only C L M
M00761* 97.50 934 943 931 940 2 7.454 7.454 0.87 0.87 Pro only C L M
M00749* 97.30 934 940 931 937 2 6.515 6.515 0.83 0.83 Pro only C L M
M00976* 97.44 935 943 932 940 1 7.928 7.928 0.88 0.88 Pro only C L M
M00792* 97.44 935 943 932 940 2 5.111 5.111 0.83 0.83 Pro only C L M
MA0006 97.22 935 940 932 937 1 7.680 7.680 0.92 0.92 Ahr-ARNT C L M
M00803* 97.22 935 940 932 937 1 5.436 5.436 0.84 0.84 Pro only C L M
MA0067 97.37 936 943 933 940 2 5.591 5.591 0.86 0.86 Pax-2 C L M
M00963* 94.87 937 945 934 942 1 6.116 6.116 0.84 0.84 Pro only C L M
M00684* 92.50 937 946 934 943 2 5.999 5.999 0.82 0.82 Pro only C L M
M00032 92.50 937 946 934 943 2 7.814 7.814 0.86 0.86 c-Ets-1(p54) C L M
MA0098 97.22 939 944 936 941 1 3.839 3.839 0.82 0.82 c-ETS C L M
MA0028 87.50 939 948 936 945 2 8.282 8.282 0.89 0.89 Elk-1 C L M
M00698* 76.32 945 952 942 949 2 8.356 7.881 0.87 0.85 Pro only C L M
M00189 71.43 946 957 943 954 2 8.962 8.962 0.87 0.87 AP-2 C L
M00915* 69.77 946 958 943 955 2 7.928 7.928 0.83 0.83 Pro only C L
M00469* 69.23 948 956 945 953 2 5.674 5.224 0.85 0.83 Pro only C L M
MA0003 69.23 948 956 945 953 2 5.674 5.224 0.85 0.83 AP2alpha C L M
M00803* 69.44 950 955 947 952 1 8.243 8.243 0.97 0.97 Pro only C L M
M00976* 66.67 950 958 947 955 1 5.961 5.961 0.82 0.82 Pro only C L
M00716* 65.79 951 958 948 955 1 7.759 7.759 0.91 0.91 Pro only C L
M00986* 66.67 952 957 949 954 1 6.205 6.205 0.92 0.92 Pro only C L
M00695* 64.86 952 958 949 955 1 5.779 5.779 0.84 0.84 Pro only C L
MA0032 68.42 967 974 956 963 1 4.501 4.823 0.83 0.85 FREAC-3 C M
MA0033 65.79 969 976 958 965 1 4.478 5.135 0.81 0.84 FREAC-7 C L
M00101 67.57 970 976 959 965 2 2.840 2.840 0.81 0.81 CdxA C L
M00744* 62.50 970 979 959 968 1 7.907 7.907 0.83 0.83 Pro only C L
M00252 57.78 970 984 959 973 1 6.159 6.495 0.81 0.82 TATA C only
M00101 64.86 971 977 960 966 2 3.516 3.516 0.84 0.84 CdxA C L
MA0033 63.16 971 978 960 967 2 5.020 5.020 0.83 0.83 FREAC-7 C L
M00216 60.00 971 980 960 969 1 11.416 11.955 0.93 0.95 TATA C only
M00402* 60.00 971 980 960 969 1 10.242 6.921 0.97 0.86 Pro only C only
M00980* 62.16 972 978 961 967 2 9.858 9.858 1.00 1.00 Pro only C L
M00101 62.16 973 979 962 968 1 3.520 3.520 0.84 0.84 CdxA C L
M00101 62.16 973 979 962 968 2 6.542 6.542 0.96 0.96 CdxA C L
M00100 62.16 973 979 962 968 2 5.686 5.686 0.89 0.89 CdxA C L
M00471* 60.53 973 980 962 969 1 9.126 7.135 0.90 0.84 Pro only C only
M00498* 60.53 973 980 962 969 2 3.965 4.829 0.82 0.85 Pro only C only
M00707* 57.14 973 984 962 973 1 6.948 10.622 0.83 0.94 Pro only C only
M00101 59.46 974 980 963 969 1 3.139 3.058 0.82 0.82 CdxA C only

LAGAN

LAGAN ALIGNMENT

                                                                                                              
seq1      gc--------------------------------------------------------------------------------------------------
                                                                                                              
seq2      agaatcaataaaatatttgaagtattttttaagactgtacagctggagctccaggtttaaattagagctctgccatttactagatatggttggtcaagaa
                  10        20        30        40        50        60        70        80        90       100

                           10        20        30        40        50        60        70        80        90 
seq1      -----------tatttcttaatctaTAACATGGAAAACACACACACacacacacacacacacacacacacatgcacgcgcgcgcacacacacacacatac
                     |||||| |  || |||| |||| ||  | | |   | |   ||||                                            
seq2      aattaaccttgtatttcatcgtccaTAAAATGGGAATAAAATAATAagatctacac--------------------------------------------
                 110       120       130       140       150                                                  

                100       110       120       130             140       150        160       170       180    
seq1      tcactcactcaccaggcacacactaggcctatgggcaaaa------GAGATAATTTATGAATAGTTCTT-gcacaacacctactacgtaataaAAGATCC
                               | |||   |   |  | ||      |||||||| ||||   ||||||| |     |||||   || | |  | |  | |
seq2      --------------------taatagatttgatgaaagaatttaatGAGATAATCTATGCGAAGTTCTTagtctggcacctggcacatga--aTAAGTGC
                               160       170       180       190       200       210       220         230    

             190       200        210       220       230       240       250       260       270       280   
seq1      ATCACATAATGTTATgagatgt-gttactatggccattgttcgctttctgatttttacaaactttcctaatCTGAAAGTGGACCTTTCAAAACCcTTTCT
          ||||||||||| | | || | |  ||| | |||                   ||  |  | ||||||       |||||  | |||||||| || || ||
seq2      ATCACATAATGATGTtagctattattattgtgg-------------------ttgcattatctttccgttcAAAAAAGTACAACTTTCAAAGCC-TTGCT
             240       250       260                          270       280       290       300        310    

              290       300        310        320       330       340       350       360         370       38
seq1      GTgagaacaacccgcagtt-agtaAGCTATC-tTTTTCTTTCAATTTTGTTTTCCAAAGGCTCTGTAGTAAACTGTTgaaaac--agCATCTCCTTtagT
          |||    | ||| | |||| | ||| |||||  || ||||||||| ||  |||| |||| | | |||  ||||  ||  |||   ||| |||||  | | 
seq2      GTgttggcgacctgtagtttaataATCTATCgcTTCTCTTTCAATCTTAATTTCTAAAGACACAGTAACAAACCATTccaaatgaagCGTCTCCCCttgC
             320       330       340       350       360       370       380       390       400       410    

          0       390       400                          410       420       430       440       450       460
seq1      ACCATTTAATCCTGAGTCACTTGTTTTC-------------------TCACTAAAGTAACTGaggagaaacaaaaggaaaaaggaaagggaggaaggaag
          |  | |||| | |||||||    || |                    |||||||||||| ||         ||||  | |   ||               
seq2      AATACTTAACCTTGAGTCAACAATTCTTgtaattattaaatattcatTCACTAAAGTAATTGttttttttaaaaaatagaggtga---------------
             420       430       440       450       460       470       480       490                        

                 470       480       490       500       510       520       530       540       550          
seq1      aaggaaggaaagaaagaagagaaaggaacggaacagaaaggaaaagaaaagaaaagagaaaagaagagaagagaaaaactagcTAAGACAATGG------
                                                                                             || ||||||||      
seq2      -----------------------------------------------------------------------------------TAGGACAATGGcctaac
                                                                                           500       510      

                 560       570       580       590       600       610       620       630       640       650
seq1      ----gATTGTAATTAAACTTttttggttgttggttctATTTCCCTGAGGCgaggtaggggaaaagaaccaagtgaagtctatccgaccacgcggctcctg
              ||| | |||||||||||                ||||| || |||| ||| ||||  ||            |  ||  | |||  | |  |  || 
seq2      tacagATCGCAATTAAACTTt----------------ATTTCTCTAAGGC-aggcagggtgaattctttgctccgaacctcccggactcctctccctctc
           520       530                       540       550        560       570       580       590       60

                                      660       670       680       690       700       710       720       73
seq1      ag---------------------ccaggaccctctccactGTGCGCGGtgcaacgagggTACCCGgacagtgctggtgagcttgctgcggactggggagc
           |                      | |  |||||||    | ||| |||    ||   || |||||      | |||||||       |  | |||  | 
seq2      cgactttgtataacagagggagctccgagccctctctggcGCGCGAGGtatttcgtctgTCCCCGggggtgccaggtgagccccagcggatccgggaggg
          0       610       620       630       640       650       660       670       680       690       70

          0                 740       750       760       770         780       790       800                 
seq1      cgggcacagg----------GCAGCTACTGCAGgttgctcagcggcatccgagac--tcccggtgcctcagggactctggccagtac-------------
             ||   |           ||||   ||||||| | |  |||  |  ||    |   ||||   | ||  || |||  |||||| |             
seq2      taagctgggactcctcgcgaGCAGTAGCTGCAGggtaccaagcttcgccctctgcgtccccgcgccttcgcggtctcccgccagtgcaggtccggggccc
          0       710       720       730       740       750       760       770       780       790       80

              810       820       830       840       850       860        870       880       890       900  
seq1      -ccagacaggggacgcaccaggctCGATCGgtCCAACCTCTGGGAAGatccccgcccttcagc-gCGCTCCCGGGTCTCCCAGCCtggactcggtgcgcg
           |  |  || ||||      |||   ||| | | ||| ||||||    |  |||  ||   || || ||||||  ||| ||  ||  | |   |   || 
seq2      ccaggcgagcggacaaggttggccTAATCTgcCAAACTTCTGGGGCAtttaccgtgctctggccgCCCTCCCGATTCTTCCCTCCgcgcccttgcctgct
          0       810       820       830       840       850       860       870       880       890       90

               910       920       930       940       950       960       970       980       990      1000  
seq1      gctctCCTCCCCGAGGCTCCGGAAGGGAAGGAGGCGTGTCCGGAGCTGGCGGGCGGGcgggagggaGCTGTATAAAAagcgctggcggcgcagcagcc--
           ||| ||| |||  |||||||||||||||||||||||||||||||| ||||||||||        | |||||||||| |||| |||||| ||||||||  
seq2      tctcgCCTACCCCGGGCTCCGGAAGGGAAGGAGGCGTGTCCGGAGCAGGCGGGCGGG--------aACTGTATAAAA-gcgccggcggctcagcagccgg
          0       910       920       930       940       950               960        970       980       990

                    
seq1      ----------
                    
seq2      gcttcgctcg
                1000

LAGAN ALIGNED HITS

Matrix Identity Seq1 from Seq1 to Seq2 from Seq2 to Strand Score1 Score2 Rel.Score1 Rel.Score2 Factor Found by:
C = CONREAL
L = LAGAN
M = MAVID
B = BLASTZ
M00770* 57.14 17 28 126 137 1 5.448 5.571 0.81 0.81 Pro only L C M
M00930* 58.54 20 30 129 139 2 9.401 8.299 0.87 0.84 Pro only L C M
MA0095 61.11 20 25 129 134 2 6.225 5.236 0.89 0.84 Yin-Yang L C M
M00493* 55.26 22 29 131 138 2 6.502 5.059 0.90 0.83 Pro only L C M
M00494* 55.26 22 29 131 138 2 6.539 4.964 0.89 0.82 Pro only L C M
MA0041 54.76 26 37 135 146 2 6.932 10.457 0.81 0.88 HFH-2 L C M
M00077 56.41 132 140 183 191 1 6.914 6.914 0.87 0.87 GATA-3 L C M
M00278 56.41 132 140 183 191 1 5.406 7.381 0.81 0.87 Lmo2 complex L C M
MA0109 57.89 132 139 183 190 2 8.621 8.621 0.97 0.97 RUSH1-alfa L C M
M00203 56.10 133 143 184 194 1 7.017 6.607 0.83 0.82 GATA-X L C M
M00630* 56.41 133 141 184 192 2 5.141 5.617 0.80 0.82 Pro only L C M
M00789* 59.46 133 139 184 190 1 8.181 8.181 0.93 0.93 Pro only L C M
MA0035 58.33 133 138 184 189 1 4.460 4.460 0.86 0.86 GATA-1 L C M
MA0036 57.14 133 137 184 188 1 6.232 6.232 0.98 0.98 GATA-2 L C M
MA0037 58.33 133 138 184 189 1 7.189 7.189 0.95 0.95 GATA-3 L C M
M00396 59.46 135 141 186 192 1 5.086 4.306 0.88 0.84 En-1 L C M
M00465* 56.10 135 145 186 196 2 12.677 14.155 0.90 0.94 Pro only L C M
MA0063 59.46 135 141 186 192 1 7.419 5.430 0.92 0.84 Nkx L C M
MA0075 62.86 136 140 187 191 2 9.124 5.937 1.00 0.87 S8 L C M
M00101 59.46 138 144 189 195 1 7.364 3.116 1.00 0.82 CdxA L C M
M00253 57.89 138 145 189 196 2 4.254 2.804 0.87 0.81 cap L C M
M00159 53.49 139 151 190 202 1 5.230 6.475 0.80 0.84 C/EBP L C M
MA0033 57.89 141 148 192 199 2 6.565 5.684 0.90 0.86 FREAC-7 L C M
M00396 56.76 146 152 197 203 1 4.748 4.132 0.87 0.83 En-1 L C M
M00493* 55.26 147 154 198 205 1 6.242 5.765 0.89 0.86 Pro only L C M
M00494* 55.26 147 154 198 205 1 5.710 4.907 0.86 0.82 Pro only L C M
M00497* 55.26 147 154 198 205 1 4.416 4.029 0.83 0.81 Pro only L C M
M00499* 55.26 147 154 198 205 1 6.553 6.898 0.92 0.94 Pro only L C M
M00500* 55.26 147 154 198 205 1 4.373 5.001 0.82 0.84 Pro only L C M
MA0080 52.78 149 154 200 205 2 4.249 4.249 0.81 0.81 SPI-1 L C M
M00967* 56.41 178 186 228 236 1 7.059 5.595 0.86 0.81 Pro only L C M
M00075 57.50 181 190 231 240 2 5.767 4.669 0.86 0.82 GATA-1 L C M
M00076 57.50 181 190 231 240 2 5.163 4.325 0.84 0.80 GATA-2 L C M
M00162 56.82 182 195 232 245 2 8.212 10.772 0.86 0.93 Oct-1 L C M
M00253 60.53 183 190 233 240 1 3.011 3.497 0.82 0.84 cap L C M
M00396 62.16 183 189 233 239 2 5.558 4.504 0.91 0.85 En-1 L C M
MA0025 58.54 183 193 233 243 2 8.971 9.533 0.84 0.86 E4BP4 L C M
MA0035 61.11 183 188 233 238 2 6.713 6.294 0.98 0.96 GATA-1 L C M
MA0067 60.53 183 190 233 240 2 4.744 4.744 0.83 0.83 Pax-2 L C M
M00045 59.52 184 195 234 245 2 11.157 11.157 0.88 0.88 E4BP4 L C M
M00220 60.98 184 194 234 244 1 8.532 8.532 0.81 0.81 SREBP-1 L C M
M00704* 63.89 184 189 234 239 2 5.285 5.285 0.83 0.83 Pro only L C M
M00801* 63.89 184 189 234 239 1 5.311 5.311 0.84 0.84 Pro only L C M
MA0036 62.86 184 188 234 238 2 5.105 5.105 0.91 0.91 GATA-2 L C M
MA0043 59.52 184 195 234 245 1 7.233 7.233 0.81 0.81 HLF L C M
MA0043 59.52 184 195 234 245 2 6.879 6.879 0.80 0.80 HLF L C M
MA0067 63.16 184 191 234 241 1 4.221 4.221 0.81 0.81 Pax-2 L C M
MA0089 63.89 184 189 234 239 1 4.292 4.292 0.80 0.80 TCF11-MafG L C M
M00220 60.98 185 195 235 245 2 8.252 8.252 0.81 0.81 SREBP-1 L C M
M00228 62.50 185 194 235 244 1 7.873 7.873 0.83 0.83 VBP L C M
M00228 62.50 185 194 235 244 2 7.500 7.500 0.82 0.82 VBP L C M
M00260 62.50 185 194 235 244 1 8.298 8.298 0.85 0.85 HLF L C M
M00260 62.50 185 194 235 244 2 8.414 8.414 0.85 0.85 HLF L C M
M00271 63.89 185 190 235 240 2 5.943 5.943 0.85 0.85 AML-1a L C M
M00624* 64.86 185 191 235 241 1 5.096 5.096 0.84 0.84 Pro only L C M
M00731* 63.16 185 192 235 242 1 6.725 6.725 0.82 0.82 Pro only L C M
M00751* 63.89 185 190 235 240 2 6.346 6.346 0.83 0.83 Pro only L C M
MA0033 63.16 185 192 235 242 1 6.560 6.560 0.90 0.90 FREAC-7 L C M
M00040 60.53 186 193 236 243 1 6.602 6.602 0.80 0.80 CRE-BP1 L C M
M00253 60.53 186 193 236 243 1 3.414 3.414 0.83 0.83 cap L C M
M01029* 60.53 186 193 236 243 2 7.423 7.423 0.84 0.84 Pro only L C M
M00137 58.14 187 199 237 249 1 7.939 10.063 0.88 0.96 Oct-1 L C
M00240 62.16 187 193 237 243 2 6.437 6.437 0.83 0.83 Nkx2-5 L C M
M00394 61.54 187 195 237 245 2 5.622 5.622 0.82 0.82 Msx-1 L C M
M00395 61.54 187 195 237 245 2 4.725 4.725 0.86 0.86 HOXA3 L C M
MA0063 62.16 187 193 237 243 2 4.731 4.731 0.82 0.82 Nkx L C M
M00253 63.16 188 195 238 245 1 3.125 3.125 0.82 0.82 cap L C M
MA0036 65.71 188 192 238 242 1 3.363 3.363 0.81 0.81 GATA-2 L C M
M00100 62.16 189 195 239 245 1 4.356 4.356 0.82 0.82 CdxA L C M
M00100 62.16 189 195 239 245 2 5.825 5.825 0.90 0.90 CdxA L C M
M00101 62.16 189 195 239 245 1 4.952 4.952 0.90 0.90 CdxA L C M
M00101 62.16 189 195 239 245 2 4.952 4.952 0.90 0.90 CdxA L C M
M00253 60.53 189 196 239 246 2 3.859 5.265 0.85 0.91 cap L C
M00395 61.54 189 197 239 247 1 6.061 4.445 0.93 0.84 HOXA3 L C
MA0078 61.54 189 197 239 247 2 5.720 6.120 0.81 0.82 SOX17 L C
M00396 62.16 190 196 240 246 1 4.748 4.108 0.87 0.83 En-1 L C
MA0075 65.71 191 195 241 245 2 5.343 5.343 0.84 0.84 S8 L C M
M00486* 61.54 255 263 287 295 1 6.173 5.874 0.89 0.88 Pro only L C
MA0103 52.78 264 269 296 301 1 5.313 4.388 0.84 0.81 deltaEF1 L C M
M00253 50.00 270 277 302 309 1 3.565 3.062 0.84 0.82 cap L only
M00805* 50.00 270 275 302 307 1 5.940 9.662 0.84 1.00 Pro only L C
MA0081 56.76 279 285 310 316 2 5.356 4.704 0.83 0.80 SPI-B L C M
M00624* 51.35 307 313 339 345 1 6.915 4.681 0.91 0.82 Pro only L M
M00747* 54.05 315 321 348 354 1 5.565 9.609 0.80 0.95 Pro only L C
M00772* 57.78 315 329 348 362 1 13.151 9.704 0.90 0.82 Pro only L C
M00148 56.76 316 322 349 355 2 7.723 5.573 0.95 0.86 SRY L C
M00486* 58.97 317 325 350 358 2 4.878 4.718 0.84 0.83 Pro only L C
M00498* 60.53 318 325 351 358 1 5.233 5.233 0.87 0.87 Pro only L C M
M00500* 60.53 318 325 351 358 1 4.387 4.387 0.82 0.82 Pro only L C M
MA0102 59.52 318 329 351 362 1 6.161 7.367 0.80 0.84 cEBP L C M
M00100 59.46 319 325 352 358 1 4.197 4.197 0.81 0.81 CdxA L C M
M00805* 58.33 319 324 352 357 2 5.716 5.716 0.83 0.83 Pro only L C M
M00972* 58.54 319 329 352 362 2 13.060 8.417 0.95 0.83 Pro only L C M
M00100 59.46 320 326 353 359 2 4.080 4.080 0.81 0.81 CdxA L C M
M00313* 60.53 320 327 353 360 1 5.049 5.049 0.84 0.84 Pro only L C M
M00314* 60.53 320 327 353 360 1 4.759 4.927 0.82 0.83 Pro only L C M
M00315* 60.53 320 327 353 360 1 4.654 4.803 0.82 0.83 Pro only L C M
M00253 60.53 322 329 355 362 1 4.692 5.372 0.89 0.92 cap L C M
M00130 61.90 323 334 356 367 1 7.576 7.366 0.83 0.82 FOXD3 L C M
MA0041 61.90 323 334 356 367 1 8.036 6.766 0.83 0.80 HFH-2 L C M
MA0047 61.90 323 334 356 367 1 6.920 7.433 0.80 0.81 HNF-3beta L C M
M00109 70.45 329 342 362 375 2 6.972 8.523 0.83 0.87 C/EBPbeta L C M
M00493* 73.68 330 337 363 370 1 6.502 7.410 0.90 0.94 Pro only L C M
M00494* 73.68 330 337 363 370 1 6.539 6.468 0.89 0.89 Pro only L C M
M00496* 73.68 330 337 363 370 1 7.486 6.071 0.95 0.89 Pro only L C M
M00498* 73.68 330 337 363 370 1 7.526 4.563 0.95 0.84 Pro only L C M
M00499* 73.68 330 337 363 370 1 7.420 7.769 0.96 0.98 Pro only L C M
M00500* 73.68 330 337 363 370 1 6.619 6.011 0.90 0.88 Pro only L C M
M00750* 72.97 330 336 363 369 2 8.254 6.906 0.94 0.89 Pro only L C M
M00101 72.97 331 337 364 370 1 4.356 6.844 0.87 0.98 CdxA L C M
M00770* 71.43 331 342 364 375 2 8.098 7.459 0.90 0.88 Pro only L C M
M00912* 71.43 331 342 364 375 1 7.071 7.759 0.84 0.86 Pro only L C M
M00486* 71.79 334 342 367 375 1 5.052 6.172 0.85 0.89 Pro only L C M
MA0032 65.79 341 348 374 381 1 6.086 6.238 0.92 0.93 FREAC-3 L C M
M00486* 56.41 348 356 381 389 1 6.693 7.263 0.92 0.94 Pro only L C M
M00624* 56.76 348 354 381 387 1 5.144 5.338 0.84 0.85 Pro only L C M
MA0040 56.10 348 358 381 391 2 8.119 7.800 0.81 0.80 HFH-1 L C M
M00963* 51.28 367 375 402 410 1 8.027 5.560 0.91 0.82 Pro only L C M
M00485* 62.50 379 388 414 423 2 7.182 9.179 0.81 0.86 Pro only L C M
M00240 62.16 382 388 417 423 2 6.437 7.967 0.83 0.90 Nkx2-5 L C M
MA0063 62.16 382 388 417 423 2 5.897 6.870 0.86 0.90 Nkx L C M
M00711* 55.81 386 398 421 433 1 8.072 8.906 0.83 0.86 Pro only L C M
M00924* 54.76 387 398 422 433 2 9.318 12.457 0.90 1.00 Pro only L C M
M00514* 52.38 389 400 424 435 2 6.798 9.036 0.80 0.87 Pro only L C
M00517* 51.16 389 401 424 436 1 7.615 10.398 0.81 0.89 Pro only L C
M00983* 53.66 389 399 424 434 1 10.802 9.142 0.91 0.86 Pro only L C
M00172 53.66 390 400 425 435 2 10.025 6.429 0.92 0.80 AP-1 L C
M00173 53.66 390 400 425 435 2 10.658 6.527 0.93 0.80 AP-1 L C
M00174 53.66 390 400 425 435 2 11.069 9.063 0.95 0.89 AP-1 L C
M00188 53.66 390 400 425 435 2 11.841 6.965 0.96 0.81 AP-1 L C
M00490* 53.66 390 400 425 435 1 9.630 10.603 0.86 0.88 Pro only L C
M00199 56.41 391 399 426 434 1 9.767 8.969 0.91 0.89 AP-1 L C
M00199 56.41 391 399 426 434 2 11.446 8.636 0.97 0.87 AP-1 L C
M00925* 56.41 391 399 426 434 1 7.922 7.521 0.88 0.86 Pro only L C
M00925* 56.41 391 399 426 434 2 11.012 9.867 0.98 0.94 Pro only L C
M00926* 55.26 391 398 426 433 2 8.672 7.520 0.91 0.87 Pro only L C M
MA0099 55.26 391 398 426 433 1 9.681 8.178 0.93 0.88 c-FOS L C M
M00711* 53.49 392 404 427 439 2 8.974 6.959 0.86 0.80 Pro only L C
M00926* 55.26 392 399 427 434 1 10.797 9.690 0.98 0.94 Pro only L C
MA0099 55.26 392 399 427 434 2 11.255 7.669 0.98 0.86 c-FOS L C
M00285 51.16 395 407 430 442 1 6.442 5.616 0.84 0.81 TCF11 L only
MA0089 55.56 395 400 430 435 2 5.481 4.307 0.86 0.80 TCF11-MafG L C
M00253 52.63 396 403 431 438 1 5.751 3.068 0.93 0.82 cap L C
M00253 50.00 408 415 462 469 1 4.050 4.050 0.86 0.86 cap L C M
M00240 51.35 409 415 463 469 2 6.437 6.437 0.83 0.83 Nkx2-5 L C M
M00318* 50.00 409 416 463 470 1 8.578 8.578 0.87 0.87 Pro only L C M
M00794* 54.76 409 420 463 474 1 6.121 5.999 0.81 0.80 Pro only L C M
MA0063 51.35 409 415 463 469 2 4.731 4.731 0.82 0.82 Nkx L C M
M00486* 53.85 410 418 464 472 1 6.667 6.667 0.91 0.91 Pro only L C M
M00690* 52.63 410 417 464 471 1 5.635 5.635 0.84 0.84 Pro only L C M
MA0032 55.26 411 418 465 472 1 6.138 6.138 0.93 0.93 FREAC-3 L C M
M00148 56.76 413 419 467 473 1 6.998 6.998 0.92 0.92 SRY L C M
M00394 53.85 414 422 468 476 1 6.139 7.164 0.85 0.90 Msx-1 L C
MA0075 54.29 414 418 468 472 1 4.766 4.766 0.82 0.82 S8 L C M
M00496* 55.26 415 422 469 476 2 4.615 4.886 0.83 0.84 Pro only L C
MA0084 51.28 544 552 500 508 1 8.602 6.685 0.90 0.83 SRY L M
M00253 50.00 547 554 503 510 2 4.062 4.062 0.86 0.86 cap L M
M00805* 50.00 548 553 504 509 1 5.534 5.534 0.82 0.82 Pro only L M
M00137 51.16 556 568 522 534 1 7.046 5.599 0.85 0.80 Oct-1 L C M
M00241 52.63 560 567 526 533 2 6.879 8.070 0.83 0.88 Nkx2-5 L C M
M00498* 52.63 560 567 526 533 1 3.965 4.829 0.82 0.85 Pro only L C M
MA0063 51.35 560 566 526 532 2 7.328 9.317 0.92 1.00 Nkx L C M
MA0075 54.29 560 564 526 530 2 9.124 4.766 1.00 0.82 S8 L C M
M00100 54.05 561 567 527 533 1 4.701 4.701 0.84 0.84 CdxA L C M
M00101 54.05 561 567 527 533 1 4.423 4.423 0.88 0.88 CdxA L C M
M00101 54.05 561 567 527 533 2 4.502 4.502 0.88 0.88 CdxA L C M
M00630* 53.85 561 569 527 535 2 5.260 5.260 0.81 0.81 Pro only L C M
MA0075 54.29 561 565 527 531 1 9.124 9.124 1.00 1.00 S8 L C M
M00100 56.76 562 568 528 534 1 4.007 4.007 0.80 0.80 CdxA L C M
M00486* 53.85 562 570 528 536 1 6.922 6.922 0.93 0.93 Pro only L C M
M01003* 53.66 588 598 538 548 2 8.455 6.219 0.88 0.80 Pro only L M
M00141 53.85 589 597 539 547 2 7.570 6.210 0.85 0.81 Lyf-1 L M
MA0081 51.35 589 595 539 545 2 4.764 6.322 0.81 0.86 SPI-B L M
M00469* 51.28 592 600 542 550 2 9.439 6.558 0.97 0.87 Pro only L M
M00470* 51.28 592 600 542 550 2 10.288 6.642 0.97 0.86 Pro only L M
MA0003 51.28 592 600 542 550 2 9.439 6.558 0.97 0.87 AP2alpha L M
M00716* 55.26 670 677 640 647 1 7.926 7.102 0.91 0.88 Pro only L C M
M00986* 55.56 689 694 659 664 2 6.912 7.524 0.95 0.98 Pro only L C M
M00253 52.63 740 747 720 727 1 4.136 5.133 0.87 0.91 cap L M
MA0055 50.00 741 752 721 732 1 10.989 11.399 0.88 0.89 Myf L M
MA0055 50.00 741 752 721 732 2 8.077 8.641 0.82 0.83 Myf L M
M00253 52.63 743 750 723 730 2 5.133 4.136 0.91 0.87 cap L M
MA0035 58.33 828 833 824 829 2 5.238 4.006 0.90 0.83 GATA-1 L C M
MA0037 58.33 828 833 824 829 2 3.853 6.224 0.81 0.91 GATA-3 L C M
MA0036 60.00 829 833 825 829 2 4.628 4.454 0.88 0.87 GATA-2 L C M
M00532* 54.76 836 847 832 843 1 8.745 9.794 0.82 0.84 Pro only L C M
M00777* 53.49 836 848 832 844 1 7.057 10.256 0.82 0.90 Pro only L C M
M00396 56.76 837 843 833 839 2 3.902 4.132 0.82 0.83 En-1 L C M
M00253 60.53 839 846 835 842 2 3.479 3.982 0.84 0.86 cap L C M
M00141 53.85 842 850 838 846 1 9.768 5.992 0.92 0.80 Lyf-1 L C M
M00986* 55.56 844 849 840 845 1 5.633 5.530 0.90 0.89 Pro only L C M
MA0056 55.56 844 849 840 845 1 4.846 4.989 0.81 0.81 MZF_1-4 L C M
M00649* 55.26 868 875 865 872 2 6.721 9.124 0.81 0.89 Pro only L C M
M00986* 55.56 870 875 867 872 2 7.492 7.492 0.98 0.98 Pro only L C M
MA0028 52.50 870 879 867 876 2 6.971 5.694 0.84 0.80 Elk-1 L C M
MA0098 55.56 870 875 867 872 1 3.822 3.822 0.82 0.82 c-ETS L C M
MA0057 52.50 878 887 875 884 2 5.671 5.764 0.80 0.80 MZF_5-13 L M
M00695* 67.57 908 914 905 911 2 8.909 4.962 0.97 0.81 Pro only L C M
M00915* 72.09 908 920 905 917 1 10.787 9.245 0.91 0.87 Pro only L C M
M00189 73.81 909 920 906 917 1 9.304 6.442 0.88 0.80 AP-2 L C M
M00189 73.81 909 920 906 917 2 7.095 6.626 0.82 0.81 AP-2 L C M
M00986* 72.22 910 915 907 912 2 7.524 5.430 0.98 0.89 Pro only L C M
M00469* 76.92 911 919 908 916 1 4.313 4.490 0.80 0.81 Pro only L C M
M00469* 76.92 911 919 908 916 2 9.709 8.513 0.98 0.94 Pro only L C M
M00470* 76.92 911 919 908 916 1 5.291 5.267 0.81 0.81 Pro only L C M
M00470* 76.92 911 919 908 916 2 10.580 9.574 0.98 0.95 Pro only L C M
MA0003 76.92 911 919 908 916 1 4.313 4.490 0.80 0.81 AP2alpha L C M
MA0003 76.92 911 919 908 916 2 9.709 8.513 0.98 0.94 AP2alpha L C M
M00915* 86.05 916 928 913 925 2 6.855 7.207 0.80 0.81 Pro only L C M
M00025 86.36 917 930 914 927 1 9.351 9.351 0.86 0.86 Elk-1 L C M
M00074 88.37 918 930 915 927 1 7.167 7.167 0.84 0.84 c-Ets-1(p54) L C M
MA0028 87.50 918 927 915 924 1 10.199 10.199 0.95 0.95 Elk-1 L C M
M00032 90.00 920 929 917 926 1 7.705 7.705 0.86 0.86 c-Ets-1(p54) L C M
M00108 90.00 920 929 917 926 1 9.583 9.583 0.86 0.86 NRF-2 L C M
M00341* 90.48 920 931 917 928 1 8.635 8.635 0.80 0.80 Pro only L C M
M00658* 89.47 920 927 917 924 1 7.753 7.753 0.87 0.87 Pro only L C M
MA0062 90.00 920 929 917 926 1 9.583 9.583 0.86 0.86 NRF-2 L C M
MA0076 89.74 920 928 917 925 1 7.836 7.836 0.81 0.81 SAP-1 L C M
MA0081 89.19 920 926 917 923 1 8.238 8.238 0.92 0.92 SPI-B L C M
M00743* 89.47 921 928 918 925 1 8.077 8.077 0.88 0.88 Pro only L C M
M00771* 90.48 921 932 918 929 2 8.089 8.089 0.82 0.82 Pro only L C M
M00971* 89.47 921 928 918 925 2 7.996 7.996 0.89 0.89 Pro only L C M
M00492* 89.47 922 929 919 926 2 8.448 8.448 0.91 0.91 Pro only L C M
M00496* 89.47 922 929 919 926 2 5.438 5.438 0.86 0.86 Pro only L C M
M00497* 89.47 922 929 919 926 2 6.977 6.977 0.95 0.95 Pro only L C M
M00498* 89.47 922 929 919 926 2 4.668 4.668 0.85 0.85 Pro only L C M
M00499* 89.47 922 929 919 926 2 5.727 5.727 0.89 0.89 Pro only L C M
M00500* 89.47 922 929 919 926 2 5.902 5.902 0.87 0.87 Pro only L C M
M00655* 89.19 922 928 919 925 2 6.124 6.124 0.84 0.84 Pro only L C M
MA0080 88.89 922 927 919 924 1 8.711 8.711 1.00 1.00 SPI-1 L C M
MA0098 88.89 922 927 919 924 2 7.797 7.797 1.00 1.00 c-ETS L C M
M00087 90.48 923 934 920 931 1 6.383 6.383 0.81 0.81 Ik-2 L C M
M00704* 91.67 923 928 920 925 1 5.117 5.117 0.82 0.82 Pro only L C M
M00972* 92.68 923 933 920 930 1 7.274 7.274 0.80 0.80 Pro only L C M
MA0028 92.50 923 932 920 929 1 5.775 5.775 0.80 0.80 Elk-1 L C M
MA0057 92.50 923 932 920 929 1 6.376 6.376 0.82 0.82 MZF_5-13 L C M
MA0039 92.50 924 933 921 930 1 8.899 8.899 0.92 0.92 Gklf L C M
M00255 90.91 925 938 922 935 1 6.706 6.706 0.82 0.82 GC box L C M
M00658* 92.11 925 932 922 929 1 6.693 6.693 0.83 0.83 Pro only L C M
M00720* 92.31 925 933 922 930 1 6.353 6.353 0.80 0.80 Pro only L C M
M00747* 91.89 925 931 922 928 2 7.250 7.250 0.87 0.87 Pro only L C M
M00963* 92.31 925 933 922 930 2 5.121 5.121 0.81 0.81 Pro only L C M
MA0014 92.00 925 944 922 941 1 9.750 9.750 0.82 0.82 Bsap L C M
MA0039 90.00 925 934 922 931 1 5.323 5.323 0.81 0.81 Gklf L C M
MA0081 91.89 925 931 922 928 1 6.493 6.493 0.86 0.86 SPI-B L C M
M00649* 92.11 926 933 923 930 1 7.389 7.389 0.83 0.83 Pro only L C M
M00971* 92.11 926 933 923 930 2 6.109 6.109 0.83 0.83 Pro only L C M
M00986* 91.67 926 931 923 928 1 5.392 5.392 0.88 0.88 Pro only L C M
MA0098 91.67 926 931 923 928 2 3.658 3.658 0.81 0.81 c-ETS L C M
MA0111 90.24 926 936 923 933 1 7.506 7.506 0.81 0.81 Spz1 L C M
M00492* 92.11 927 934 924 931 2 6.570 6.570 0.84 0.84 Pro only L C M
M00496* 92.11 927 934 924 931 2 3.932 3.932 0.80 0.80 Pro only L C M
M00497* 92.11 927 934 924 931 2 6.946 6.946 0.95 0.95 Pro only L C M
M00498* 92.11 927 934 924 931 2 3.804 3.804 0.81 0.81 Pro only L C M
M00499* 92.11 927 934 924 931 2 4.828 4.828 0.85 0.85 Pro only L C M
M00500* 92.11 927 934 924 931 2 7.634 7.634 0.93 0.93 Pro only L C M
M00695* 94.59 927 933 924 930 1 4.962 4.962 0.81 0.81 Pro only L C M
MA0080 94.44 927 932 924 929 1 8.579 8.579 0.99 0.99 SPI-1 L C M
MA0098 94.44 927 932 924 929 2 5.777 5.777 0.91 0.91 c-ETS L C M
M00235 93.48 928 943 925 940 1 9.133 9.133 0.85 0.85 AhR/Arnt L C M
M00704* 94.44 928 933 925 930 1 5.117 5.117 0.82 0.82 Pro only L C M
M00706* 92.31 928 936 925 933 1 8.928 8.928 0.90 0.90 Pro only L C M
M00313* 92.11 929 936 926 933 2 5.108 5.108 0.84 0.84 Pro only L C M
M00315* 92.11 929 936 926 933 2 5.049 5.049 0.84 0.84 Pro only L C M
M00720* 92.31 929 937 926 934 1 6.555 6.555 0.81 0.81 Pro only L C M
M00695* 91.89 930 936 927 933 1 5.186 5.186 0.82 0.82 Pro only L C M
M00963* 92.31 930 938 927 935 2 6.672 6.672 0.86 0.86 Pro only L C M
M00971* 92.11 930 937 927 934 2 5.207 5.207 0.80 0.80 Pro only L C M
MA0103 91.67 930 935 927 932 2 5.159 5.159 0.84 0.84 deltaEF1 L C M
M00196 95.35 931 943 928 940 1 8.906 8.906 0.82 0.82 Sp1 L C M
M00255 95.45 931 944 928 941 1 11.408 11.408 0.90 0.90 GC box L C M
M00932* 95.35 931 943 928 940 1 8.314 8.314 0.81 0.81 Pro only L C M
MA0098 94.44 931 936 928 933 2 3.674 3.674 0.81 0.81 c-ETS L C M
MA0057 97.50 932 941 929 938 1 6.086 6.086 0.81 0.81 MZF_5-13 L C M
M00008 97.50 933 942 930 939 1 6.806 6.806 0.82 0.82 Sp1 L C M
M00695* 97.30 933 939 930 936 1 5.555 5.555 0.83 0.83 Pro only L C M
M00778* 97.56 933 943 930 940 1 7.000 7.000 0.81 0.81 Pro only L C M
M00272 97.50 934 943 931 940 1 9.479 9.479 0.92 0.92 p53 L C M
M00272 97.50 934 943 931 940 2 6.924 6.924 0.86 0.86 p53 L C M
M00749* 97.30 934 940 931 937 2 6.515 6.515 0.83 0.83 Pro only L C M
M00761* 97.50 934 943 931 940 1 8.491 8.491 0.90 0.90 Pro only L C M
M00761* 97.50 934 943 931 940 2 7.454 7.454 0.87 0.87 Pro only L C M
M00792* 97.44 935 943 932 940 2 5.111 5.111 0.83 0.83 Pro only L C M
M00803* 97.22 935 940 932 937 1 5.436 5.436 0.84 0.84 Pro only L C M
M00976* 97.44 935 943 932 940 1 7.928 7.928 0.88 0.88 Pro only L C M
MA0006 97.22 935 940 932 937 1 7.680 7.680 0.92 0.92 Ahr-ARNT L C M
MA0067 97.37 936 943 933 940 2 5.591 5.591 0.86 0.86 Pax-2 L C M
M00032 92.50 937 946 934 943 2 7.814 7.814 0.86 0.86 c-Ets-1(p54) L C M
M00684* 92.50 937 946 934 943 2 5.999 5.999 0.82 0.82 Pro only L C M
M00963* 94.87 937 945 934 942 1 6.116 6.116 0.84 0.84 Pro only L C M
MA0028 87.50 939 948 936 945 2 8.282 8.282 0.89 0.89 Elk-1 L C M
MA0098 97.22 939 944 936 941 1 3.839 3.839 0.82 0.82 c-ETS L C M
M00698* 76.32 945 952 942 949 2 8.356 7.881 0.87 0.85 Pro only L C M
M00189 71.43 946 957 943 954 2 8.962 8.962 0.87 0.87 AP-2 L C
M00665* 68.18 946 959 943 956 1 8.558 10.651 0.81 0.86 Pro only L only
M00915* 69.77 946 958 943 955 2 7.928 7.928 0.83 0.83 Pro only L C
M00469* 69.23 948 956 945 953 2 5.674 5.224 0.85 0.83 Pro only L C M
MA0003 69.23 948 956 945 953 2 5.674 5.224 0.85 0.83 AP2alpha L C M
M00803* 69.44 950 955 947 952 1 8.243 8.243 0.97 0.97 Pro only L C M
M00976* 66.67 950 958 947 955 1 5.961 5.961 0.82 0.82 Pro only L C
M00716* 65.79 951 958 948 955 1 7.759 7.759 0.91 0.91 Pro only L C
M00649* 63.16 952 959 949 956 1 7.201 7.201 0.82 0.82 Pro only L only
M00695* 64.86 952 958 949 955 1 5.779 5.779 0.84 0.84 Pro only L C
M00986* 66.67 952 957 949 954 1 6.205 6.205 0.92 0.92 Pro only L C
M00803* 61.11 954 959 951 956 1 8.243 8.243 0.97 0.97 Pro only L only
MA0033 65.79 969 976 958 965 1 4.478 5.135 0.81 0.84 FREAC-7 L C
M00101 67.57 970 976 959 965 2 2.840 2.840 0.81 0.81 CdxA L C
M00744* 62.50 970 979 959 968 1 7.907 7.907 0.83 0.83 Pro only L C
M00101 64.86 971 977 960 966 2 3.516 3.516 0.84 0.84 CdxA L C
MA0033 63.16 971 978 960 967 2 5.020 5.020 0.83 0.83 FREAC-7 L C
M00980* 62.16 972 978 961 967 2 9.858 9.858 1.00 1.00 Pro only L C
M00100 62.16 973 979 962 968 2 5.686 5.686 0.89 0.89 CdxA L C
M00101 62.16 973 979 962 968 1 3.520 3.520 0.84 0.84 CdxA L C
M00101 62.16 973 979 962 968 2 6.542 6.542 0.96 0.96 CdxA L C

MAVID

MAVID ALIGNMENT

                                                                                                              
seq1      gc--------------------------------------------------------------------------------------------------
                                                                                                              
seq2      agaatcaataaaatatttgaagtattttttaagactgtacagctggagctccaggtttaaattagagctctgccatttactagatatggttggtcaagaa
                  10        20        30        40        50        60        70        80        90       100

                           10        20        30        40        50        60        70        80        90 
seq1      -----------tatttcttaatctaTAACATGGAAAACACACACACacacacacacacacacacacacacatgcacgcgcgcgcacacacacacacatac
                     |||||| |  || |||| |||| ||  | | |   | |   ||||  | | |                                     
seq2      aattaaccttgtatttcatcgtccaTAAAATGGGAATAAAATAATAagatctacactaataga-------------------------------------
                 110       120       130       140       150       160                                        

                100       110       120       130               140       150       160        170       180  
seq1      tcactcactcaccaggcacacactaggcctatgggcaaaa--------GAGATAATTTATGAATAGTTCTTGCacaa-cacctactacgtAATAAAAGAT
                                       | ||   |||         |||||||| ||||   |||||||   |   |||||   ||  |  || |  |
seq2      -----------------------------tttgatgaaagaatttaatGAGATAATCTATGCGAAGTTCTTAGtctggcacctggcac--ATGAATAAGT
                                           170       180       190       200       210       220         230  

               190       200       210       220         230       240       250       260       270       280
seq1      CCATCACATAATGttatgagatgtgttactatggccattg--ttcgctttctgatttttacaaactttcctaatctgaaagtgGACCTTtcaaaacCCTT
           ||||||||||||  |||  |  | ||| ||| |   |||  ||  ||||| |     | ||||             |||||  | ||||| ||| ||||
seq2      GCATCACATAATG--atgttagctattattattgtggttgcattatctttccg-----ttcaaa-------------aaagtaCAACTTtc-aaagCCTT
               240         250       260       270       280                         290       300        310 

                 290       300        310        320       330       340       350       360         370      
seq1      TCTGTGagaacaacccgcagtt-agtAAGCTATCTTTt-TCTTTCAATTTTGTTTTCCAAAGGCTCTGTAGTAAACTGTTgaaaac--agCATCTCCTTt
           |||||    | ||| | |||| | ||| |||||  || ||||||||| ||  |||| |||| | | |||  ||||  ||  |||   ||| |||||  |
seq2      GCTGTGttggcgacctgtagtttaatAATCTATCGCTtcTCTTTCAATCTTAATTTCTAAAGACACAGTAACAAACCATTccaaatgaagCGTCTCCCCt
                320       330       340       350       360       370       380       390       400       410 

           380       390             400                    410       420       430       440       450       
seq1      agTACCATTTAATCCTGAGTCA------cttgttttc-------------TCACTAAAGTAACtgaggagaaacaaaaggaaaaaggaaagggaggaagg
           | |  | |||| | |||||||      |||||  |              |||||||||||| |                                    
seq2      tgCAATACTTAACCTTGAGTCAacaattcttgtaattattaaatattcatTCACTAAAGTAATt------------------------------------
                420       430       440       450       460       470                                         

          460       470       480       490       500       510       520       530       540       550       
seq1      aagaaggaaggaaagaaagaagagaaaggaacggaacagaaaggaaaagaaaagaaaagagaaaagaagagaagagaaaaactagcTAAGACAATGG---
                                                               |        ||| || ||| | ||         || ||||||||   
seq2      -----------------------------------------------------gttttttttaaaaaatagaggtga---------TAGGACAATGGcct
                                                                 480       490                500       510   

                    560       570       580       590       600       610       620       630           640   
seq1      -------gATTGTAATTAAACTTttttggttgttggttcTATTTCCCTGAGGCgaggtaggggaaaagaaccaagtgaagtctatccg----accacgcg
                 ||| | ||||||||||                |||||| || |||| ||| |||             ||||| ||| | |     ||| | ||
seq2      aactacagATCGCAATTAAACTT----------------TATTTCTCTAAGGC-aggcagg-------------gtgaattctttgctccgaacctcccg
              520       530                       540       550                     560       570       580   

                                           650        660       670       680       690       700       710   
seq1      g-ctcct----------------------------gagccagga-ccctctccactGTGCGCGGtgcaacgagggTACCCGgacagtgctggtgagcttg
          | |||||                            ||||   || |||||||    | ||| |||    ||   || |||||      | |||||||   
seq2      gactcctctccctctccgactttgtataacagagggagctccgagccctctctggcGCGCGAGGtatttcgtctgTCCCCGggggtgccaggtgagc-cc
              590       600       610       620       630       640       650       660       670       680   

              720            730             740       750       760          770       780       790       80
seq1      ctgcggactggggagc-----cgggcaca------GGGCAGCTACTGCAGgttgctcagc---ggcatccgagactcccggtgcctcagggactctggcc
          | |||||   |||||      | || ||       | ||||   ||||||| | |  |||   | | || | | | ||||   | ||  || |||  |||
seq2      cagcggatccgggagggtaagctgggactcctcgcGAGCAGTAGCTGCAGggtaccaagcttcgccctctgcgtc-cccgcgccttcgcggtctcccgcc
               690       700       710       720       730       740       750        760       770       780 

          0                    810        820       830       840       850       860        870       880    
seq1      agtac-------------ccagac-aggggacgcaccaggctCGATCGgtCCAACCTCTGGGAAGatccccgcccttcagc-gCGCTCCCGGGTCTCCCA
          ||| |             |||| | || ||||      |||   ||| | | ||| ||||||    |  |||  ||   || || ||||||  ||| || 
seq2      agtgcaggtccggggcccccaggcgagcggacaaggttggccTAATCTgcCAAACTTCTGGGGCAtttaccgtgctctggccgCCCTCCCGATTCTTCCC
                790       800       810       820       830       840       850       860       870       880 

             890       900       910       920       930       940       950       960       970       980    
seq1      GCCtggactcggtgcgcggctctCCTCCCCGAGGCTCCGGAAGGGAAGGAGGCGTGTCCGGAGCTGGCGGGCgggcgggaGGGAGCTGTAtaaaaagcgc
           ||  | |   |   ||  ||| ||| |||  |||||||||||||||||||||||||||||||| |||||||        |||| |||||| ||||||||
seq2      TCCgcgcccttgcctgcttctcgCCTACCCCGGGCTCCGGAAGGGAAGGAGGCGTGTCCGGAGCAGGCGGGC--------GGGAACTGTAt-aaaagcgc
                890       900       910       920       930       940       950               960        970  

             990      1000            
seq1      tggcggcgcagcagcc------------
           |||||| ||||||||            
seq2      cggcggctcagcagccgggcttcgctcg
               980       990      1000

MAVID ALIGNED HITS

Matrix Identity Seq1 from Seq1 to Seq2 from Seq2 to Strand Score1 Score2 Rel.Score1 Rel.Score2 Factor Found by:
C = CONREAL
L = LAGAN
M = MAVID
B = BLASTZ
M00770* 57.14 17 28 126 137 1 5.448 5.571 0.81 0.81 Pro only M C L
M00930* 58.54 20 30 129 139 2 9.401 8.299 0.87 0.84 Pro only M C L
MA0095 61.11 20 25 129 134 2 6.225 5.236 0.89 0.84 Yin-Yang M C L
M00493* 55.26 22 29 131 138 2 6.502 5.059 0.90 0.83 Pro only M C L
M00494* 55.26 22 29 131 138 2 6.539 4.964 0.89 0.82 Pro only M C L
MA0041 54.76 26 37 135 146 2 6.932 10.457 0.81 0.88 HFH-2 M C L
M00077 56.41 132 140 183 191 1 6.914 6.914 0.87 0.87 GATA-3 M C L
M00278 56.41 132 140 183 191 1 5.406 7.381 0.81 0.87 Lmo2 complex M C L
MA0109 57.89 132 139 183 190 2 8.621 8.621 0.97 0.97 RUSH1-alfa M C L
M00203 56.10 133 143 184 194 1 7.017 6.607 0.83 0.82 GATA-X M C L
M00630* 56.41 133 141 184 192 2 5.141 5.617 0.80 0.82 Pro only M C L
M00789* 59.46 133 139 184 190 1 8.181 8.181 0.93 0.93 Pro only M C L
MA0035 58.33 133 138 184 189 1 4.460 4.460 0.86 0.86 GATA-1 M C L
MA0036 57.14 133 137 184 188 1 6.232 6.232 0.98 0.98 GATA-2 M C L
MA0037 58.33 133 138 184 189 1 7.189 7.189 0.95 0.95 GATA-3 M C L
M00396 59.46 135 141 186 192 1 5.086 4.306 0.88 0.84 En-1 M C L
M00465* 56.10 135 145 186 196 2 12.677 14.155 0.90 0.94 Pro only M C L
MA0063 59.46 135 141 186 192 1 7.419 5.430 0.92 0.84 Nkx M C L
MA0075 62.86 136 140 187 191 2 9.124 5.937 1.00 0.87 S8 M C L
M00101 59.46 138 144 189 195 1 7.364 3.116 1.00 0.82 CdxA M C L
M00253 57.89 138 145 189 196 2 4.254 2.804 0.87 0.81 cap M C L
M00159 53.49 139 151 190 202 1 5.230 6.475 0.80 0.84 C/EBP M C L
MA0033 57.89 141 148 192 199 2 6.565 5.684 0.90 0.86 FREAC-7 M C L
M00396 56.76 146 152 197 203 1 4.748 4.132 0.87 0.83 En-1 M C L
M00493* 55.26 147 154 198 205 1 6.242 5.765 0.89 0.86 Pro only M C L
M00494* 55.26 147 154 198 205 1 5.710 4.907 0.86 0.82 Pro only M C L
M00497* 55.26 147 154 198 205 1 4.416 4.029 0.83 0.81 Pro only M C L
M00499* 55.26 147 154 198 205 1 6.553 6.898 0.92 0.94 Pro only M C L
M00500* 55.26 147 154 198 205 1 4.373 5.001 0.82 0.84 Pro only M C L
M00960* 52.50 147 156 198 207 2 5.574 5.721 0.80 0.81 Pro only M C
MA0080 52.78 149 154 200 205 2 4.249 4.249 0.81 0.81 SPI-1 M C L
M00498* 50.00 173 180 223 230 2 4.829 4.668 0.85 0.85 Pro only M C
M00967* 56.41 178 186 228 236 1 7.059 5.595 0.86 0.81 Pro only M C L
M00075 57.50 181 190 231 240 2 5.767 4.669 0.86 0.82 GATA-1 M C L
M00076 57.50 181 190 231 240 2 5.163 4.325 0.84 0.80 GATA-2 M C L
M00162 56.82 182 195 232 245 2 8.212 10.772 0.86 0.93 Oct-1 M C L
M00253 60.53 183 190 233 240 1 3.011 3.497 0.82 0.84 cap M C L
M00396 62.16 183 189 233 239 2 5.558 4.504 0.91 0.85 En-1 M C L
MA0025 58.54 183 193 233 243 2 8.971 9.533 0.84 0.86 E4BP4 M C L
MA0035 61.11 183 188 233 238 2 6.713 6.294 0.98 0.96 GATA-1 M C L
MA0067 60.53 183 190 233 240 2 4.744 4.744 0.83 0.83 Pax-2 M C L
M00045 59.52 184 195 234 245 2 11.157 11.157 0.88 0.88 E4BP4 M C L
M00220 60.98 184 194 234 244 1 8.532 8.532 0.81 0.81 SREBP-1 M C L
M00704* 63.89 184 189 234 239 2 5.285 5.285 0.83 0.83 Pro only M C L
M00801* 63.89 184 189 234 239 1 5.311 5.311 0.84 0.84 Pro only M C L
MA0036 62.86 184 188 234 238 2 5.105 5.105 0.91 0.91 GATA-2 M C L
MA0043 59.52 184 195 234 245 1 7.233 7.233 0.81 0.81 HLF M C L
MA0043 59.52 184 195 234 245 2 6.879 6.879 0.80 0.80 HLF M C L
MA0067 63.16 184 191 234 241 1 4.221 4.221 0.81 0.81 Pax-2 M C L
MA0089 63.89 184 189 234 239 1 4.292 4.292 0.80 0.80 TCF11-MafG M C L
M00220 60.98 185 195 235 245 2 8.252 8.252 0.81 0.81 SREBP-1 M C L
M00228 62.50 185 194 235 244 1 7.873 7.873 0.83 0.83 VBP M C L
M00228 62.50 185 194 235 244 2 7.500 7.500 0.82 0.82 VBP M C L
M00260 62.50 185 194 235 244 1 8.298 8.298 0.85 0.85 HLF M C L
M00260 62.50 185 194 235 244 2 8.414 8.414 0.85 0.85 HLF M C L
M00271 63.89 185 190 235 240 2 5.943 5.943 0.85 0.85 AML-1a M C L
M00624* 64.86 185 191 235 241 1 5.096 5.096 0.84 0.84 Pro only M C L
M00731* 63.16 185 192 235 242 1 6.725 6.725 0.82 0.82 Pro only M C L
M00751* 63.89 185 190 235 240 2 6.346 6.346 0.83 0.83 Pro only M C L
MA0033 63.16 185 192 235 242 1 6.560 6.560 0.90 0.90 FREAC-7 M C L
M00040 60.53 186 193 236 243 1 6.602 6.602 0.80 0.80 CRE-BP1 M C L
M00253 60.53 186 193 236 243 1 3.414 3.414 0.83 0.83 cap M C L
M01029* 60.53 186 193 236 243 2 7.423 7.423 0.84 0.84 Pro only M C L
M00240 62.16 187 193 237 243 2 6.437 6.437 0.83 0.83 Nkx2-5 M C L
M00394 61.54 187 195 237 245 2 5.622 5.622 0.82 0.82 Msx-1 M C L
M00395 61.54 187 195 237 245 2 4.725 4.725 0.86 0.86 HOXA3 M C L
MA0063 62.16 187 193 237 243 2 4.731 4.731 0.82 0.82 Nkx M C L
M00253 63.16 188 195 238 245 1 3.125 3.125 0.82 0.82 cap M C L
MA0036 65.71 188 192 238 242 1 3.363 3.363 0.81 0.81 GATA-2 M C L
M00100 62.16 189 195 239 245 1 4.356 4.356 0.82 0.82 CdxA M C L
M00100 62.16 189 195 239 245 2 5.825 5.825 0.90 0.90 CdxA M C L
M00101 62.16 189 195 239 245 1 4.952 4.952 0.90 0.90 CdxA M C L
M00101 62.16 189 195 239 245 2 4.952 4.952 0.90 0.90 CdxA M C L
MA0075 65.71 191 195 241 245 2 5.343 5.343 0.84 0.84 S8 M C L
MA0103 52.78 264 269 296 301 1 5.313 4.388 0.84 0.81 deltaEF1 M C L
MA0039 55.00 277 286 308 317 2 7.746 5.827 0.88 0.83 Gklf M C
M00658* 55.26 278 285 309 316 2 6.105 6.105 0.81 0.81 Pro only M C
MA0081 56.76 279 285 310 316 2 5.356 4.704 0.83 0.80 SPI-B M C L
M00630* 51.28 306 314 338 346 2 5.735 5.449 0.82 0.81 Pro only M only
M00075 50.00 307 316 339 348 2 5.265 5.408 0.84 0.85 GATA-1 M only
M00076 50.00 307 316 339 348 2 6.874 5.332 0.91 0.84 GATA-2 M only
M00077 51.28 307 315 339 347 2 6.795 6.309 0.86 0.84 GATA-3 M only
M00462* 50.00 307 316 339 348 2 7.477 6.040 0.92 0.87 Pro only M only
M00624* 51.35 307 313 339 345 1 6.915 4.681 0.91 0.82 Pro only M L
M00789* 51.35 308 314 340 346 2 8.238 6.495 0.94 0.87 Pro only M only
MA0035 52.78 309 314 341 346 2 6.066 6.161 0.94 0.95 GATA-1 M only
MA0037 52.78 309 314 341 346 2 8.388 7.633 1.00 0.97 GATA-3 M only
MA0036 51.43 310 314 342 346 2 6.232 6.232 0.98 0.98 GATA-2 M only
M00498* 60.53 318 325 351 358 1 5.233 5.233 0.87 0.87 Pro only M C L
M00500* 60.53 318 325 351 358 1 4.387 4.387 0.82 0.82 Pro only M C L
MA0102 59.52 318 329 351 362 1 6.161 7.367 0.80 0.84 cEBP M C L
M00100 59.46 319 325 352 358 1 4.197 4.197 0.81 0.81 CdxA M C L
M00805* 58.33 319 324 352 357 2 5.716 5.716 0.83 0.83 Pro only M C L
M00972* 58.54 319 329 352 362 2 13.060 8.417 0.95 0.83 Pro only M C L
M00100 59.46 320 326 353 359 2 4.080 4.080 0.81 0.81 CdxA M C L
M00313* 60.53 320 327 353 360 1 5.049 5.049 0.84 0.84 Pro only M C L
M00314* 60.53 320 327 353 360 1 4.759 4.927 0.82 0.83 Pro only M C L
M00315* 60.53 320 327 353 360 1 4.654 4.803 0.82 0.83 Pro only M C L
M00253 60.53 322 329 355 362 1 4.692 5.372 0.89 0.92 cap M C L
M00130 61.90 323 334 356 367 1 7.576 7.366 0.83 0.82 FOXD3 M C L
MA0041 61.90 323 334 356 367 1 8.036 6.766 0.83 0.80 HFH-2 M C L
MA0047 61.90 323 334 356 367 1 6.920 7.433 0.80 0.81 HNF-3beta M C L
M00109 70.45 329 342 362 375 2 6.972 8.523 0.83 0.87 C/EBPbeta M C L
M00493* 73.68 330 337 363 370 1 6.502 7.410 0.90 0.94 Pro only M C L
M00494* 73.68 330 337 363 370 1 6.539 6.468 0.89 0.89 Pro only M C L
M00496* 73.68 330 337 363 370 1 7.486 6.071 0.95 0.89 Pro only M C L
M00498* 73.68 330 337 363 370 1 7.526 4.563 0.95 0.84 Pro only M C L
M00499* 73.68 330 337 363 370 1 7.420 7.769 0.96 0.98 Pro only M C L
M00500* 73.68 330 337 363 370 1 6.619 6.011 0.90 0.88 Pro only M C L
M00750* 72.97 330 336 363 369 2 8.254 6.906 0.94 0.89 Pro only M C L
M00101 72.97 331 337 364 370 1 4.356 6.844 0.87 0.98 CdxA M C L
M00770* 71.43 331 342 364 375 2 8.098 7.459 0.90 0.88 Pro only M C L
M00912* 71.43 331 342 364 375 1 7.071 7.759 0.84 0.86 Pro only M C L
M00486* 71.79 334 342 367 375 1 5.052 6.172 0.85 0.89 Pro only M C L
MA0032 65.79 341 348 374 381 1 6.086 6.238 0.92 0.93 FREAC-3 M C L
M00486* 56.41 348 356 381 389 1 6.693 7.263 0.92 0.94 Pro only M C L
M00624* 56.76 348 354 381 387 1 5.144 5.338 0.84 0.85 Pro only M C L
MA0040 56.10 348 358 381 391 2 8.119 7.800 0.81 0.80 HFH-1 M C L
M00963* 51.28 367 375 402 410 1 8.027 5.560 0.91 0.82 Pro only M C L
M00485* 62.50 379 388 414 423 2 7.182 9.179 0.81 0.86 Pro only M C L
M00240 62.16 382 388 417 423 2 6.437 7.967 0.83 0.90 Nkx2-5 M C L
MA0063 62.16 382 388 417 423 2 5.897 6.870 0.86 0.90 Nkx M C L
M00711* 55.81 386 398 421 433 1 8.072 8.906 0.83 0.86 Pro only M C L
M00924* 54.76 387 398 422 433 2 9.318 12.457 0.90 1.00 Pro only M C L
M00926* 55.26 391 398 426 433 2 8.672 7.520 0.91 0.87 Pro only M C L
MA0099 55.26 391 398 426 433 1 9.681 8.178 0.93 0.88 c-FOS M C L
M00253 50.00 408 415 462 469 1 4.050 4.050 0.86 0.86 cap M C L
M00240 51.35 409 415 463 469 2 6.437 6.437 0.83 0.83 Nkx2-5 M C L
M00318* 50.00 409 416 463 470 1 8.578 8.578 0.87 0.87 Pro only M C L
M00794* 54.76 409 420 463 474 1 6.121 5.999 0.81 0.80 Pro only M C L
MA0063 51.35 409 415 463 469 2 4.731 4.731 0.82 0.82 Nkx M C L
M00486* 53.85 410 418 464 472 1 6.667 6.667 0.91 0.91 Pro only M C L
M00690* 52.63 410 417 464 471 1 5.635 5.635 0.84 0.84 Pro only M C L
MA0032 55.26 411 418 465 472 1 6.138 6.138 0.93 0.93 FREAC-3 M C L
M00148 56.76 413 419 467 473 1 6.998 6.998 0.92 0.92 SRY M C L
MA0075 54.29 414 418 468 472 1 4.766 4.766 0.82 0.82 S8 M C L
MA0084 51.28 544 552 500 508 1 8.602 6.685 0.90 0.83 SRY M L
M00253 50.00 547 554 503 510 2 4.062 4.062 0.86 0.86 cap M L
M00805* 50.00 548 553 504 509 1 5.534 5.534 0.82 0.82 Pro only M L
M00137 51.16 556 568 522 534 1 7.046 5.599 0.85 0.80 Oct-1 M C L
M00241 52.63 560 567 526 533 2 6.879 8.070 0.83 0.88 Nkx2-5 M C L
M00498* 52.63 560 567 526 533 1 3.965 4.829 0.82 0.85 Pro only M C L
MA0063 51.35 560 566 526 532 2 7.328 9.317 0.92 1.00 Nkx M C L
MA0075 54.29 560 564 526 530 2 9.124 4.766 1.00 0.82 S8 M C L
M00100 54.05 561 567 527 533 1 4.701 4.701 0.84 0.84 CdxA M C L
M00101 54.05 561 567 527 533 1 4.423 4.423 0.88 0.88 CdxA M C L
M00101 54.05 561 567 527 533 2 4.502 4.502 0.88 0.88 CdxA M C L
M00630* 53.85 561 569 527 535 2 5.260 5.260 0.81 0.81 Pro only M C L
MA0075 54.29 561 565 527 531 1 9.124 9.124 1.00 1.00 S8 M C L
M00100 56.76 562 568 528 534 1 4.007 4.007 0.80 0.80 CdxA M C L
M00486* 53.85 562 570 528 536 1 6.922 6.922 0.93 0.93 Pro only M C L
M00493* 50.00 587 594 537 544 1 8.398 7.525 0.98 0.94 Pro only M only
M00494* 50.00 587 594 537 544 1 8.150 6.400 0.96 0.89 Pro only M only
M00496* 50.00 587 594 537 544 1 6.998 5.682 0.93 0.88 Pro only M only
M00497* 50.00 587 594 537 544 1 6.648 4.927 0.93 0.86 Pro only M only
M00498* 50.00 587 594 537 544 1 6.662 6.662 0.92 0.92 Pro only M only
M00499* 50.00 587 594 537 544 1 6.360 7.001 0.92 0.94 Pro only M only
M00500* 50.00 587 594 537 544 1 7.665 6.606 0.94 0.90 Pro only M only
M01003* 53.66 588 598 538 548 2 8.455 6.219 0.88 0.80 Pro only M L
M00141 53.85 589 597 539 547 2 7.570 6.210 0.85 0.81 Lyf-1 M L
MA0081 51.35 589 595 539 545 2 4.764 6.322 0.81 0.86 SPI-B M L
M00469* 51.28 592 600 542 550 2 9.439 6.558 0.97 0.87 Pro only M L
M00470* 51.28 592 600 542 550 2 10.288 6.642 0.97 0.86 Pro only M L
MA0003 51.28 592 600 542 550 2 9.439 6.558 0.97 0.87 AP2alpha M L
M00716* 55.26 670 677 640 647 1 7.926 7.102 0.91 0.88 Pro only M C L
M00986* 55.56 689 694 659 664 2 6.912 7.524 0.95 0.98 Pro only M C L
MA0055 50.00 738 749 718 729 1 9.471 9.229 0.85 0.84 Myf M only
M00253 52.63 740 747 720 727 1 4.136 5.133 0.87 0.91 cap M L
MA0055 50.00 741 752 721 732 1 10.989 11.399 0.88 0.89 Myf M L
MA0055 50.00 741 752 721 732 2 8.077 8.641 0.82 0.83 Myf M L
M00253 52.63 743 750 723 730 2 5.133 4.136 0.91 0.87 cap M L
MA0035 58.33 828 833 824 829 2 5.238 4.006 0.90 0.83 GATA-1 M C L
MA0037 58.33 828 833 824 829 2 3.853 6.224 0.81 0.91 GATA-3 M C L
MA0036 60.00 829 833 825 829 2 4.628 4.454 0.88 0.87 GATA-2 M C L
M00532* 54.76 836 847 832 843 1 8.745 9.794 0.82 0.84 Pro only M C L
M00777* 53.49 836 848 832 844 1 7.057 10.256 0.82 0.90 Pro only M C L
M00396 56.76 837 843 833 839 2 3.902 4.132 0.82 0.83 En-1 M C L
M00253 60.53 839 846 835 842 2 3.479 3.982 0.84 0.86 cap M C L
M00141 53.85 842 850 838 846 1 9.768 5.992 0.92 0.80 Lyf-1 M C L
M00986* 55.56 844 849 840 845 1 5.633 5.530 0.90 0.89 Pro only M C L
MA0056 55.56 844 849 840 845 1 4.846 4.989 0.81 0.81 MZF_1-4 M C L
M00649* 55.26 868 875 865 872 2 6.721 9.124 0.81 0.89 Pro only M C L
M00986* 55.56 870 875 867 872 2 7.492 7.492 0.98 0.98 Pro only M C L
MA0028 52.50 870 879 867 876 2 6.971 5.694 0.84 0.80 Elk-1 M C L
MA0098 55.56 870 875 867 872 1 3.822 3.822 0.82 0.82 c-ETS M C L
MA0057 52.50 878 887 875 884 2 5.671 5.764 0.80 0.80 MZF_5-13 M L
M00695* 67.57 908 914 905 911 2 8.909 4.962 0.97 0.81 Pro only M C L
M00915* 72.09 908 920 905 917 1 10.787 9.245 0.91 0.87 Pro only M C L
M00189 73.81 909 920 906 917 1 9.304 6.442 0.88 0.80 AP-2 M C L
M00189 73.81 909 920 906 917 2 7.095 6.626 0.82 0.81 AP-2 M C L
M00986* 72.22 910 915 907 912 2 7.524 5.430 0.98 0.89 Pro only M C L
M00469* 76.92 911 919 908 916 1 4.313 4.490 0.80 0.81 Pro only M C L
M00469* 76.92 911 919 908 916 2 9.709 8.513 0.98 0.94 Pro only M C L
M00470* 76.92 911 919 908 916 1 5.291 5.267 0.81 0.81 Pro only M C L
M00470* 76.92 911 919 908 916 2 10.580 9.574 0.98 0.95 Pro only M C L
MA0003 76.92 911 919 908 916 1 4.313 4.490 0.80 0.81 AP2alpha M C L
MA0003 76.92 911 919 908 916 2 9.709 8.513 0.98 0.94 AP2alpha M C L
M00915* 86.05 916 928 913 925 2 6.855 7.207 0.80 0.81 Pro only M C L
M00025 86.36 917 930 914 927 1 9.351 9.351 0.86 0.86 Elk-1 M C L
M00074 88.37 918 930 915 927 1 7.167 7.167 0.84 0.84 c-Ets-1(p54) M C L
MA0028 87.50 918 927 915 924 1 10.199 10.199 0.95 0.95 Elk-1 M C L
M00032 90.00 920 929 917 926 1 7.705 7.705 0.86 0.86 c-Ets-1(p54) M C L
M00108 90.00 920 929 917 926 1 9.583 9.583 0.86 0.86 NRF-2 M C L
M00341* 90.48 920 931 917 928 1 8.635 8.635 0.80 0.80 Pro only M C L
M00658* 89.47 920 927 917 924 1 7.753 7.753 0.87 0.87 Pro only M C L
MA0062 90.00 920 929 917 926 1 9.583 9.583 0.86 0.86 NRF-2 M C L
MA0076 89.74 920 928 917 925 1 7.836 7.836 0.81 0.81 SAP-1 M C L
MA0081 89.19 920 926 917 923 1 8.238 8.238 0.92 0.92 SPI-B M C L
M00743* 89.47 921 928 918 925 1 8.077 8.077 0.88 0.88 Pro only M C L
M00771* 90.48 921 932 918 929 2 8.089 8.089 0.82 0.82 Pro only M C L
M00971* 89.47 921 928 918 925 2 7.996 7.996 0.89 0.89 Pro only M C L
M00492* 89.47 922 929 919 926 2 8.448 8.448 0.91 0.91 Pro only M C L
M00496* 89.47 922 929 919 926 2 5.438 5.438 0.86 0.86 Pro only M C L
M00497* 89.47 922 929 919 926 2 6.977 6.977 0.95 0.95 Pro only M C L
M00498* 89.47 922 929 919 926 2 4.668 4.668 0.85 0.85 Pro only M C L
M00499* 89.47 922 929 919 926 2 5.727 5.727 0.89 0.89 Pro only M C L
M00500* 89.47 922 929 919 926 2 5.902 5.902 0.87 0.87 Pro only M C L
M00655* 89.19 922 928 919 925 2 6.124 6.124 0.84 0.84 Pro only M C L
MA0080 88.89 922 927 919 924 1 8.711 8.711 1.00 1.00 SPI-1 M C L
MA0098 88.89 922 927 919 924 2 7.797 7.797 1.00 1.00 c-ETS M C L
M00087 90.48 923 934 920 931 1 6.383 6.383 0.81 0.81 Ik-2 M C L
M00704* 91.67 923 928 920 925 1 5.117 5.117 0.82 0.82 Pro only M C L
M00972* 92.68 923 933 920 930 1 7.274 7.274 0.80 0.80 Pro only M C L
MA0028 92.50 923 932 920 929 1 5.775 5.775 0.80 0.80 Elk-1 M C L
MA0057 92.50 923 932 920 929 1 6.376 6.376 0.82 0.82 MZF_5-13 M C L
MA0039 92.50 924 933 921 930 1 8.899 8.899 0.92 0.92 Gklf M C L
M00255 90.91 925 938 922 935 1 6.706 6.706 0.82 0.82 GC box M C L
M00658* 92.11 925 932 922 929 1 6.693 6.693 0.83 0.83 Pro only M C L
M00720* 92.31 925 933 922 930 1 6.353 6.353 0.80 0.80 Pro only M C L
M00747* 91.89 925 931 922 928 2 7.250 7.250 0.87 0.87 Pro only M C L
M00963* 92.31 925 933 922 930 2 5.121 5.121 0.81 0.81 Pro only M C L
MA0014 92.00 925 944 922 941 1 9.750 9.750 0.82 0.82 Bsap M C L
MA0039 90.00 925 934 922 931 1 5.323 5.323 0.81 0.81 Gklf M C L
MA0081 91.89 925 931 922 928 1 6.493 6.493 0.86 0.86 SPI-B M C L
M00649* 92.11 926 933 923 930 1 7.389 7.389 0.83 0.83 Pro only M C L
M00971* 92.11 926 933 923 930 2 6.109 6.109 0.83 0.83 Pro only M C L
M00986* 91.67 926 931 923 928 1 5.392 5.392 0.88 0.88 Pro only M C L
MA0098 91.67 926 931 923 928 2 3.658 3.658 0.81 0.81 c-ETS M C L
MA0111 90.24 926 936 923 933 1 7.506 7.506 0.81 0.81 Spz1 M C L
M00492* 92.11 927 934 924 931 2 6.570 6.570 0.84 0.84 Pro only M C L
M00496* 92.11 927 934 924 931 2 3.932 3.932 0.80 0.80 Pro only M C L
M00497* 92.11 927 934 924 931 2 6.946 6.946 0.95 0.95 Pro only M C L
M00498* 92.11 927 934 924 931 2 3.804 3.804 0.81 0.81 Pro only M C L
M00499* 92.11 927 934 924 931 2 4.828 4.828 0.85 0.85 Pro only M C L
M00500* 92.11 927 934 924 931 2 7.634 7.634 0.93 0.93 Pro only M C L
M00695* 94.59 927 933 924 930 1 4.962 4.962 0.81 0.81 Pro only M C L
MA0080 94.44 927 932 924 929 1 8.579 8.579 0.99 0.99 SPI-1 M C L
MA0098 94.44 927 932 924 929 2 5.777 5.777 0.91 0.91 c-ETS M C L
M00235 93.48 928 943 925 940 1 9.133 9.133 0.85 0.85 AhR/Arnt M C L
M00704* 94.44 928 933 925 930 1 5.117 5.117 0.82 0.82 Pro only M C L
M00706* 92.31 928 936 925 933 1 8.928 8.928 0.90 0.90 Pro only M C L
M00313* 92.11 929 936 926 933 2 5.108 5.108 0.84 0.84 Pro only M C L
M00315* 92.11 929 936 926 933 2 5.049 5.049 0.84 0.84 Pro only M C L
M00720* 92.31 929 937 926 934 1 6.555 6.555 0.81 0.81 Pro only M C L
M00695* 91.89 930 936 927 933 1 5.186 5.186 0.82 0.82 Pro only M C L
M00963* 92.31 930 938 927 935 2 6.672 6.672 0.86 0.86 Pro only M C L
M00971* 92.11 930 937 927 934 2 5.207 5.207 0.80 0.80 Pro only M C L
MA0103 91.67 930 935 927 932 2 5.159 5.159 0.84 0.84 deltaEF1 M C L
M00196 95.35 931 943 928 940 1 8.906 8.906 0.82 0.82 Sp1 M C L
M00255 95.45 931 944 928 941 1 11.408 11.408 0.90 0.90 GC box M C L
M00932* 95.35 931 943 928 940 1 8.314 8.314 0.81 0.81 Pro only M C L
MA0098 94.44 931 936 928 933 2 3.674 3.674 0.81 0.81 c-ETS M C L
MA0057 97.50 932 941 929 938 1 6.086 6.086 0.81 0.81 MZF_5-13 M C L
M00008 97.50 933 942 930 939 1 6.806 6.806 0.82 0.82 Sp1 M C L
M00695* 97.30 933 939 930 936 1 5.555 5.555 0.83 0.83 Pro only M C L
M00778* 97.56 933 943 930 940 1 7.000 7.000 0.81 0.81 Pro only M C L
M00272 97.50 934 943 931 940 1 9.479 9.479 0.92 0.92 p53 M C L
M00272 97.50 934 943 931 940 2 6.924 6.924 0.86 0.86 p53 M C L
M00749* 97.30 934 940 931 937 2 6.515 6.515 0.83 0.83 Pro only M C L
M00761* 97.50 934 943 931 940 1 8.491 8.491 0.90 0.90 Pro only M C L
M00761* 97.50 934 943 931 940 2 7.454 7.454 0.87 0.87 Pro only M C L
M00792* 97.44 935 943 932 940 2 5.111 5.111 0.83 0.83 Pro only M C L
M00803* 97.22 935 940 932 937 1 5.436 5.436 0.84 0.84 Pro only M C L
M00976* 97.44 935 943 932 940 1 7.928 7.928 0.88 0.88 Pro only M C L
MA0006 97.22 935 940 932 937 1 7.680 7.680 0.92 0.92 Ahr-ARNT M C L
MA0067 97.37 936 943 933 940 2 5.591 5.591 0.86 0.86 Pax-2 M C L
M00032 92.50 937 946 934 943 2 7.814 7.814 0.86 0.86 c-Ets-1(p54) M C L
M00684* 92.50 937 946 934 943 2 5.999 5.999 0.82 0.82 Pro only M C L
M00963* 94.87 937 945 934 942 1 6.116 6.116 0.84 0.84 Pro only M C L
MA0028 87.50 939 948 936 945 2 8.282 8.282 0.89 0.89 Elk-1 M C L
MA0098 97.22 939 944 936 941 1 3.839 3.839 0.82 0.82 c-ETS M C L
M00698* 76.32 945 952 942 949 2 8.356 7.881 0.87 0.85 Pro only M C L
M00469* 69.23 948 956 945 953 2 5.674 5.224 0.85 0.83 Pro only M C L
MA0003 69.23 948 956 945 953 2 5.674 5.224 0.85 0.83 AP2alpha M C L
M00803* 69.44 950 955 947 952 1 8.243 8.243 0.97 0.97 Pro only M C L
M00646* 65.79 965 972 954 961 1 5.551 6.977 0.80 0.86 Pro only M only
M00253 65.79 966 973 955 962 2 4.533 4.979 0.88 0.90 cap M only
MA0032 68.42 967 974 956 963 1 4.501 4.823 0.83 0.85 FREAC-3 M C

BLASTZ

BLASTZ ALIGNMENT

                  10        20        30        40        50        60        70        80        90       100
seq1      gctatttcttaatctataacatggaaaacacacacacacacacacacacacacacacacacatgcacgcgcgcgcacacacacacacatactcactcact
             ||   | ||    |   |          | ||       |     | |        |  |  |     ||        | | |        |     
seq2      agaatcaataaaatatttgaagtattttttaagactgtacagctggagctccaggtttaaattagagctctgccatttactagatatggttggtcaagaa
                  10        20        30        40        50        60        70        80        90       100

                 110       120       130       140       150       160       170       180       190       200
seq1      caccaggcacacactaggcctatgggcaaaagagataatttatgaatagttcttgcacaacacctactacgtaataaaagatccatcacataatgttatg
           |  |  |    | |    |       ||| | ||  |       |   |     |  |     |       |  |    ||     |    |||  | |
seq2      aattaaccttgtatttcatcgtccataaaatgggaataaaataataagatctacactaatagatttgatgaaagaatttaatgagataatctatgcgaag
                 110       120       130       140       150       160       170       180       190       200

                 210       220       230       240       250       260       270       280       290       300
seq1      agatgtgttactatggccattgttcgctttctgatttttacaaactttcctaatctgaaagtggacctttcaaaaccctttctgtgagaacaacccgcag
             |  ||               |   |   ||  |   | ||   |      | | |   | |   || ||  | | || |  | | || |   |    
seq2      ttcttagtctggcacctggcacatgaataagtgcatcacataatgatgttagctattattattgtggttgcattatctttccgttcaaaaaagtacaact
                 210       220       230       240       250       260       270       280       290       300

                 310       320       330       340       350       360       370       380       390       400
seq1      ttagtaagctatctttttctttcaattttgttttccaaaggctctgtagtaaactgttgaaaacagcatctcctttagtaccatttaatcctgagtcact
          ||   |  ||  || | |     |  | |  |||   ||      |        |       |     |                        |      
seq2      ttcaaagccttgctgtgttggcgacctgtagtttaataatctatcgcttctctttcaatcttaatttctaaagacacagtaacaaaccattccaaatgaa
                 310       320       330       340       350       360       370       380       390       400

                 410       420       430       440       450       460       470       480       490       500
seq1      tgttttctcactaaagtaactgaggagaaacaaaaggaaaaaggaaagggaggaaggaagaaggaaggaaagaaagaagagaaaggaacggaacagaaag
             | || |  |  | ||  | |     |   ||        | ||       |              |   |  |          ||   |   |  | 
seq2      gcgtctccccttgcaatacttaaccttgagtcaacaattcttgtaattattaaatattcattcactaaagtaattgttttttttaaaaaatagaggtgat
                 410       420       430       440       450       460       470       480       490       500

                 510       520       530       540       550       560       570       580       590       600
seq1      gaaaagaaaagaaaagagaaaagaagagaagagaaaaactagctaagacaatgggattgtaattaaacttttttggttgttggttctatttccctgaggc
             |  |      ||    | |    |    |     | |     |    | |       ||||      |           |  ||  |  ||     |
seq2      aggacaatggcctaactacagatcgcaattaaactttatttctctaaggcaggcagggtgaattctttgctccgaacctcccggactcctctccctctcc
                 510       520       530       540       550       560       570       580       590       600

                 610       620       630       640       650       660       670       680       690       700
seq1      gaggtaggggaaaagaaccaagtgaagtctatccgaccacgcggctcctgagccaggaccctctccactgtgcgcggtgcaacgagggtacccggacagt
          ||  | |   || |||   |  |     |  ||          |        |      || |     ||   |  | ||  |   ||  || |||  ||
seq2      gactttgtataacagagggagctccgagccctctctggcgcgcgaggtatttcgtctgtccccgggggtgccaggtgagccccagcggatccgggagggt
                 610       620       630       640       650       660       670       680       690       700

                 710       720       730       740       750       760       770       780       790       800
seq1      gctggtgagcttgctgcggactggggagccgggcacagggcagctactgcaggttgctcagcggcatccgagaCTCCCGGTGCCTcagggactctggcca
                |  ||    |||  | |  |   | ||             |     |   | | ||| | ||   | ||||||      ||||  |   | || 
seq2      aagctgggactcctcgcgagcagtagctgcagggtaccaagcttcgccctctgcgtccccgcgccttcgcggtCTCCCGCCAGTGcaggtccggggcccc
                 710       720       730       740       750       760       770       780       790       800

                 810       820       830       840       850       860       870       880       890       900
seq1      gtacccagacaggggacgcaccaggctcgatcggtccaacctctgggaagatccccgcccttcagcgcgctcccgggtctcccagcctggactcggtgcg
              | ||             |    ||   |   |                   | |    |  |   |       || | | ||       |      
seq2      caggcgagcggacaaggttggcctaatctgccaaacttctggggcatttaccgtgctctggccgccctcccgattcttccctccgcgcccttgcctgctt
                 810       820       830       840       850       860       870       880       890       900

                 910       920       930       940       950       960       970       980       990      1000
seq1      cggctctcctccccgaggctccggaagggaaggaggcgtgtccggagctggcgggcgggcgggagggagctgtataaaaagcgctggcggcgcagcagcc
          |    || | ||  |   |    |    | ||| |        | ||  ||  ||     |      |||            || | |||        | 
seq2      ctcgcctaccccgggctccggaagggaaggaggcgtgtccggagcaggcgggcgggaactgtataaaagcgccggcggctcagcagccgggcttcgctcg
                 910       920       930       940       950       960       970       980       990      1000

BLASTZ ALIGNED HITS

Matrix Identity Seq1 from Seq1 to Seq2 from Seq2 to Strand Score1 Score2 Rel.Score1 Rel.Score2 Factor Found by:
C = CONREAL
L = LAGAN
M = MAVID
B = BLASTZ
M00189 52.38 774 785 774 785 1 6.392 7.238 0.80 0.82 AP-2 B only
M00986* 52.78 774 779 774 779 2 7.492 7.492 0.98 0.98 Pro only B C
MA0098 52.78 774 779 774 779 1 3.822 3.822 0.82 0.82 c-ETS B C

Run time: 85.7 sec