CONREAL

CONREAL ALIGNMENT

                  10        20             30        40                                                       
seq1      cttgagcaaattggtggatggtggtg-----TCATTTACTGaaacg------------------------------------------------------
                     |  |                |||||||   ||  |                                                      
seq2      tactgaacctcttataaccttgaccatcttgTCATTTAAAAaagagggtgtcaccctggtagccagtcttaaagcaaaatgaatcctcattttggaagtc
                  10        20        30        40        50        60        70        80        90       100

                             50        60        70                                       80        90       1
seq1      ------------GAAAATACAGGatgagcagattaaaggtgaacatgcaa-------------------------------TGAATGaaattttcaattt
                       |||| | || ||||  | ||          |  ||                                  || ||   |  ||   ||
seq2      tgcactcaaggaAAAAAAAAAGCatgactaaatatccaacttcctagctcagtagtcgtctttcctgagtagaaaaggctcGGAGTGttttaatcccctt
                 110       120       130       140       150       160       170       180       190       200

          00       110       120       130       140       150                                                
seq1      tgtgtatgttggtctgagatgccttttggatacatgttgtatacatgcttaCATGAGt------------------------------------------
          |                                                  || | |                                           
seq2      ttc------------------------------------------------CACGTGgaagggctggggatgtcacccactgccagagtgcttgtctagt
                                                                 210       220       230       240       250  

                                                      160       170       180       190       200       210   
seq1      -------------------------------------------AAGCAACTGGTATGaattgacggagagggaggaaggacagggcagaagatagagctg
                                                     || ||||||  | |                                           
seq2      atgccacaaaggatgcttgagatgtcccggggacaacgcggtgAAACAACTGAGAGG-------------------------------------------
               260       270       280       290       300                                                    

              220       230       240       250       260       270       280       290       300       310   
seq1      tgggagtcatcggttccttgacagaatttacagcgtggtaatggatagactctatgctatccatctatggaacaacacatctggagaagagagaagagct
                                                                                                              
seq2      ----------------------------------------------------------------------------------------------------
                                                                                                              

              320       330       340       350       360       370       380       390       400             
seq1      ggggaggctggactgtagccttgggagtggctattaaaataggagaaggggtggAGCGGAAGGGAGAGAGGAACTATGgagtgcttagcaagagaa----
                                                                |  ||||||| |  || ||  |  |||   |   | | |  |    
seq2      ------------------------------------------------------AAAGGAAGGGGGCAAGCAAAAACAgaggagtaccctacaatagatg
                                                              310       320       330       340       350     

                                                   410       420       430                                  44
seq1      -------------------------------------------GAAAGTGTtttaaggatggggat---------------------------GATAAAC
                                                     |   |||     ||  | ||||                            ||  |||
seq2      acggctagactagcccagggaaagtgcatagagaggaggaggaGTCTGTGCacgtagttttgggacagaagggatgaaaggaagaaaaaaggtGAGCAAC
            360       370       380       390       400       410       420       430       440       450     

          0       450       460       470       480       490                                                 
seq1      TGCATTGAaaGCCACTGAGAGGTGGAGAAAAAATCAGGGcagagaagtaataaaa---------------------------------------------
          |||  |||     ||||| |||| ||||||| ||    ||| ||||  || |                                                
seq2      TGCTCTGAggATAACTGAAAGGTTGAGAAAAGATTGACGcacagaataaagagggttggctcagtgggagagccttggtatgcaagaaaccgagttccac
            460       470       480       490       500       510       520       530       540       550     

                                           500       510       520       530       540       550       560    
seq1      ------------------------------GGCATCAGCAACATGGAagtcactggtgactcgcgaaaggcgatcacctttggtgtgTAGGGCACAAAAg
                                        ||| |  ||||||||||                                         |||||||| || 
seq2      ccccacaagggggcagaggaggggaaacatGGCTTTGGCAACATGGAgagatg----------------------------------AAGGGCACAGAAa
            560       570       580       590       600                                         610       620 

             570       580                590       600       610       620       630       640       650     
seq1      CCTGGGGGGGTAAAgag---------AGAGTGGAAAGTAAGAATGTCGAGACAGTCGactattattgccattttatgaatgaagaaaccgaggctcaata
            ||  ||||| |             || | | ||||||||  | | |||||||  ||  || |  | ||       |        ||| | ||    | 
seq2      TTTGACGGGGTCAGtcaaagatctagAGTGGGCAAAGTAAGGGTTTGGAGACAGGTGatcatcaccgacaaaccccaatacggagtaccaaagcagtgtt
                630       640       650       660       670       680       690       700       710       720 

            660       670       680       690       700       710       720       730       740       750     
seq1      tttgactgtctcattcaaggtgaaagccagtggggtcagatcctggacctagaatccatgcaatgatttgtgcacatcgcctattgaagagagagatcca
           ||    |               | |  | |   |                                                                 
seq2      gttatagggaggcgcagccacccaggagattcccgcagcg------------------------------------------------------------
                730       740       750       760                                                             

            760       770       780           790       800        810       820       830       840       850
seq1      attCTCTTCCAaaacGTAAAAGCCAACACTTc----CCTCAAAGGAGGCttcga-GTTAAATCATCCTTTCACGATGCcgcttccattttaaagaaaaaa
             ||||||| |      |||||||||    |        |||||| ||   |   | ||||||||||| || || || |     |  ||  ||||    
seq2      ---CTCTTCCGacctTCGAAAGCCAACCAACccttcAACTAAAGGATGCaggggcCTGAAATCATCCTTCCAAGAAGCagtcataaccttggagaaggcc
                   770       780       790       800       810       820       830       840       850       8

                 860       870       880       890       900       910                       920       930    
seq1      aaaaaaaaacgagaaggcctggtgcgggataggaatgagccgaggagctactGGCCCTctcggtcgg----------------GGGAAGACCCGCCCCTT
                                                               ||||| || |  |                 | |||| |||  ||| |
seq2      ggcttcc---------------------------------------------CGCCCTgtctgcagagcgggcgagcgcgctcGCGAAGGCCCCGCCCCT
          60                                                    870       880       890       900       910   

             940       950           960       970       980       990                        1000      1010  
seq1      TTCCGCAGCCCGAGCCcggcgcag----TCCACTGCGGCTGCGCGAGCCTGGCGCGCGCG------------------GGGCGGGAACgcggaaGGGGCT
             ||| || ||||||   |          ||||||||||||||  ||| ||||||||                     |||| |   || |  | ||||
seq2      CGGCGCCGCGCGAGCCtcccctgagcgcCGCACTGCGGCTGCGCCGGCCGGGCGCGCGGAggggggcggggacgcggaAGGCGCGGCGgccgggGAGGCT
              920       930       940       950       960       970       980       990      1000      1010   

              1020      1030      1040      1050      1060      1070      1080      1090      1100      1110  
seq1      GGGGTTGCGGCGCGGCGGCgaggaccagaccgggggcggggccggtagtgGGAGTGCGGGGCGCGCggtgacagcgcgggGTTGGCGGCgtggGACCCAG
          | ||  ||||||  |||| || |      ||                   |  | |||||||| | ||               | ||||    | || ||
seq2      GCGGCGGCGGCGGCGCGGTgaagcgagagcc-------------------GACGCGCGGGGCGAGGggacg---------CCCGACGGC----GTCCGAG
             1020      1030      1040                         1050      1060               1070          1080 

              1120      1130      1140      1150      1160      1170 
seq1      GGGGcgacagaggcagcaGCAGCCCGAGGCCtgaggagaggagaccggcggcggcggca
          || |||            |  || ||||||||||||   ||    ||            
seq2      GGCGcg------------GTGGCGCGAGGCCtgagggaggggacgcg------------
                           1090      1100      1110                  

CONREAL ALIGNED HITS

MatrixIdentitySeq1 fromSeq1 toSeq2 fromSeq2 toStrandScore1Score2Rel.Score1Rel.Score2FactorFound by:
C = CONREAL
L = LAGAN
M = MAVID
B = BLASTZ
M0025350.002734323915.0164.1310.900.86cap C L
M0010151.352834333923.6675.0210.840.90CdxA C L
M00498*50.002835334016.2585.3940.900.87Pro onlyC L
M00496*50.002835334016.7234.2440.920.81Pro onlyC L
M0010151.352935344013.8204.5790.850.88CdxA C L
M0010051.352935344014.1916.2690.810.92CdxA C L
M0010151.353036354115.8613.6760.930.84CdxA C L
M0010154.05424811311913.5912.9820.840.82CdxA C only
M00734*51.28425011312116.3866.0200.830.82Pro onlyC only
MA003950.00435211412315.1666.1860.810.84GklfC only
M0010154.05445011512114.2632.9820.870.82CdxA C only
M00318*52.63445111512217.5587.5580.830.83Pro onlyC only
M0039551.28445211512323.6593.7570.800.81HOXA3 C only
M0010154.05455111612213.7432.9020.850.81CdxA C only
M00704*50.00808518218715.1175.1170.820.82Pro onlyC only
M00726*52.7815015520420914.4098.1330.801.00Pro onlyC only
M0014851.3515716329630215.5728.5400.860.98SRY C only
M00975*51.2815716529630427.3905.2690.900.82Pro onlyC only
M00712*52.6315816529730417.0666.0020.860.82Pro onlyC only
M0000352.5015816729730617.1838.7510.810.86v-Myb C only
M0018352.5015816729730617.5845.8690.890.82c-Myb C only
M0025355.2615916629830524.7446.2470.890.95cap C only
MA010355.5616016529930414.5624.5620.810.81deltaEF1C only
MA010055.2616016729930626.2386.2600.840.84c-MYB_1C only
M00913*53.8516016829930716.5757.2620.880.91Pro onlyC only
M00773*51.2216017029930926.4917.5090.840.88Pro onlyC only
MA008154.0536837431031619.9338.0510.980.92SPI-BC only
M00658*52.6336837531031719.9448.0290.940.88Pro onlyC only
M0010852.50368377310319110.9128.9080.910.84NRF-2 C only
MA006252.50368377310319110.9128.9080.910.84NRF-2C only
MA003952.5036837731031915.9399.9160.830.95GklfC only
M00771*54.7636938031132227.3597.3970.800.80Pro onlyC only
M00971*52.6336937631131828.0808.5900.890.91Pro onlyC only
MA008052.7837037531231718.7118.1841.000.98SPI-1C only
MA009852.7837037531231727.7977.6331.000.99c-ETSC only
M00500*52.6337037731231925.9028.5650.870.97Pro onlyC only
M00498*52.6337037731231924.6685.5330.850.88Pro onlyC only
M00499*52.6337037731231925.7276.1500.890.91Pro onlyC only
M00496*52.6337037731231925.4384.7980.860.84Pro onlyC only
M00497*52.6337037731231926.9776.1960.950.91Pro onlyC only
M00655*51.3537037631231826.1246.6280.840.86Pro onlyC only
MA005755.0037138031332216.0865.6710.810.80MZF_5-13C only
M00704*52.7837137631331815.1175.1170.820.82Pro onlyC only
MA005755.0037238131432315.8097.1040.800.85MZF_5-13C only
M00986*61.1137437931632115.7686.1770.900.92Pro onlyC only
MA003957.5037438331632515.6475.1860.820.81GklfC only
MA009855.5638238732432925.9773.6580.920.81c-ETSC only
M0039651.3538439032633224.7485.1160.870.89En-1 C only
M0010154.0538539132733312.9604.2630.820.87CdxA C only
M0025350.0041041739940624.7072.7510.890.81cap C only
MA010952.6343344044945625.4584.9840.840.82RUSH1-alfaC L M
M0018355.0043444345045916.0977.3930.830.89c-Myb C L M
M0025357.8943544245145824.7785.2310.890.91cap C L M
M00773*60.9843644645246225.9786.4910.820.84Pro onlyC L M
M00913*58.9743644445246016.2786.9250.870.90Pro onlyC L M
M00630*58.9743744545346116.2635.4300.850.81Pro onlyC L M
M0025360.5344044745646322.9124.1650.810.87cap C L M
M00805*61.1144244745846327.0165.7160.880.83Pro onlyC L M
M0025368.4245045746647325.5765.5990.930.93cap C L M
M00314*71.0545245946847525.8675.2350.870.84Pro onlyC L M
M00313*71.0545245946847525.6735.5230.870.86Pro onlyC L M
M00315*71.0545245946847525.5965.3120.870.85Pro onlyC L M
M0041865.8545246246847827.1077.5350.800.82TGIF C L M
MA010361.1145846347447926.5035.3130.890.84deltaEF1C L M
M00912*66.6745947047548627.4378.8070.850.89Pro onlyC L M
M00770*66.6745947047548616.3117.2360.840.87Pro onlyC L M
M0010963.6445947247548818.5809.7820.870.90C/EBPbeta C L M
M00690*65.7946046747648325.5046.2010.840.86Pro onlyC L M
M00962*64.1046347147948715.4646.3920.830.87Pro onlyC L M
M00500*65.7946447148048725.3836.0110.860.88Pro onlyC L M
M00498*65.7946447148048725.2336.0970.870.90Pro onlyC L M
MA010965.7946447148048727.1538.1960.910.96RUSH1-alfaC L M
M00499*65.7946447148048726.7827.6810.930.97Pro onlyC L M
M00493*65.7946447148048726.1315.8140.880.87Pro onlyC L M
M00496*65.7946447148048725.2256.7310.860.92Pro onlyC L M
M00494*65.7946447148048725.4394.5780.840.81Pro onlyC L M
M00497*65.7946447148048724.1464.4510.820.83Pro onlyC L M
M00962*66.6746547348148915.4794.9220.830.81Pro onlyC L M
M00921*65.7946547248148825.7386.2000.830.85Pro onlyC L M
M00734*69.23466474482490111.9216.4291.000.83Pro onlyC L M
M00445*65.1246647848249427.3916.5010.830.80Pro onlyC L M
M0037768.2946747748349317.5037.4140.840.84Pax-4 C L M
M00770*50.0049550658659715.3009.5390.800.95Pro onlyC only
M00975*51.2850050859159927.1179.1480.890.96Pro onlyC only
MA006750.0050351059460113.9983.9980.800.80Pax-2C only
MA009550.0050651159760226.2256.2250.890.89Yin-YangC only
M00964*50.0055256360962015.1595.5780.800.81Pro onlyC L M
M00921*52.6355356061061725.5955.5950.830.83Pro onlyC L M
M00428*52.6355356061061723.9523.9520.810.81Pro onlyC L M
M00962*51.2855356161061815.7735.2800.850.83Pro onlyC L M
M00986*50.0055355861061514.1054.1050.820.82Pro onlyC L M
M00646*52.6355456161161817.6808.1500.890.91Pro onlyC L M
M00716*52.6355456161161815.8385.9740.830.83Pro onlyC L M
M00921*55.2655556261261926.3996.8610.860.88Pro onlyC L M
M00428*57.8956557262262914.0094.5110.810.83Pro onlyC L M
M00986*52.7857057562763214.2235.7060.830.90Pro onlyC L M
M00646*55.2657157862863516.72510.4330.851.00Pro onlyC L
M00986*52.7857157662863315.4304.9180.890.86Pro onlyC L
M0015958.1458259464866017.6115.2200.880.80C/EBP C L M
M0008352.6358258964865516.3966.6280.820.83MZF1 C L M
M00486*61.5458659465266014.8725.1830.840.85Pro onlyC L M
MA003263.1658759465366017.2096.9860.990.97FREAC-3C L M
M00750*62.1658759365365918.4206.8010.950.89Pro onlyC L M
M0014864.8658959565566116.9986.9980.920.92SRY C L M
MA007568.5759059465666014.7664.7660.820.82S8C L M
MA008066.6759159665766214.3914.3910.820.82SPI-1C L M
M00690*68.4259760466367026.0916.4730.860.87Pro onlyC L M
M00974*63.4159960966567517.6507.2420.840.83Pro onlyC L M
M0041961.9060161266767814.7425.3780.800.82MEIS1 C L M
MA010965.7960361066967625.1235.7290.830.85RUSH1-alfaC L M
M00792*64.1060461267067816.6195.8560.900.86Pro onlyC L M
MA010063.1660561267167816.3176.4010.840.84c-MYB_1C L M
M00500*57.8975976676276915.9764.8380.880.84Pro onlyC L M
M00498*57.8975976676276915.5334.6680.880.85Pro onlyC L M
M00499*57.8975976676276917.2116.7880.950.93Pro onlyC L M
M00496*57.8975976676276915.3956.0350.860.89Pro onlyC L M
M00497*57.8975976676276915.8996.8360.900.94Pro onlyC L M
MA008055.5676176676476926.4838.7110.911.00SPI-1C L M
MA009855.5676176676476916.3007.7970.931.00c-ETSC L M
M00486*58.9777177977478215.8346.2130.880.90Pro onlyC L M
M00967*61.5477478277778515.2625.2620.800.80Pro onlyC L M
M00809*58.1477478677778927.9169.2840.800.83Pro onlyC L M
MA004157.1477578677878927.9717.2890.830.81HFH-2C L M
M00624*59.4677678277978515.5605.5600.860.86Pro onlyC L M
M0039556.4178879679580324.2353.8160.830.81HOXA3 C only
M00486*56.4178979779680415.0695.2720.850.86Pro onlyC only
M00971*55.2679380080080725.2076.9520.800.86Pro onlyC only
MA009855.5679479980180623.6747.2290.810.97c-ETSC only
M00498*60.5380681381482125.0947.2260.860.94Pro onlyC only
M00496*60.5380681381482124.9636.1050.840.89Pro onlyC only
M0010059.4680681281482025.4765.2150.880.87CdxA C only
M00486*58.9780681481482214.9775.1780.840.85Pro onlyC only
M00925*61.5480781581582327.9166.0560.880.82Pro onlyC L M
M00462*60.0080781681582425.7776.0240.850.86Pro onlyC L M
MA003857.5080881781682518.4347.7980.880.86GfiC L M
M0039659.4680981581782323.8033.8030.810.81En-1 C L M
MA003758.3380981481782225.1625.1620.860.86GATA-3C L M
MA003558.3380981481782224.2654.2650.850.85GATA-1C L M
MA003660.0081081481882224.0004.0000.850.85GATA-2C L M
M0014859.4681081681882415.5265.5260.860.86SRY C L M
M00630*56.4181081881882625.2605.2600.810.81Pro onlyC L M
M00462*55.0081081981882724.6454.6450.810.81Pro onlyC L M
M0007655.0081081981882724.3774.3770.810.81GATA-2 C L M
MA009558.3381181681982415.1235.1230.830.83Yin-YangC L M
MA008958.3381181681982426.8116.8110.910.91TCF11-MafGC L M
M00624*56.7681181781982514.5244.5240.810.81Pro onlyC L M
M0028551.1681182381983117.5706.8690.880.85TCF11 C L M
MA003558.3381281782082525.4985.4980.910.91GATA-1C L M
M00655*56.7681281882082617.8137.8130.910.91Pro onlyC L M
M00971*55.2681281982082715.8345.8340.820.82Pro onlyC L M
M0025355.2681281982082716.4006.4000.960.96cap C L M
MA003660.0081381782182525.9785.9780.960.96GATA-2C L M
MA009858.3381381882182617.2297.2290.970.97c-ETSC L M
M00743*60.5382182882983616.5037.8120.820.87Pro onlyC L M
M00986*50.0090390886687123.5934.4810.800.84Pro onlyC L
M00500*52.6391892589790427.9694.4130.950.82Pro onlyC M
M00498*52.6391892589790425.2334.3690.870.83Pro onlyC M
MA008050.0091892389790218.5794.8970.990.84SPI-1C M
M00491*60.4792293490191328.04111.5630.800.88Pro onlyC L M
M00986*55.5692392890290726.4013.8340.930.81Pro onlyC L M
MA007960.0092493390391226.5708.5980.820.89SP1C L M
M00720*61.5492593390491227.5308.2700.840.87Pro onlyC L M
M00986*61.1192893390791225.2894.7220.880.85Pro onlyC L M
M00431*63.1693394091291916.2884.9940.850.81Pro onlyC L M
M00428*63.1693394091291915.1464.6850.850.84Pro onlyC L M
M00695*56.7693794391692227.0075.8230.890.84Pro onlyC L M
M00428*50.0094294992192824.7366.2180.840.90Pro onlyC L M
M00803*50.0094595092492924.8084.8080.810.81Pro onlyC L M
M0025365.7995996694294923.7454.1040.850.86cap C L M
M00468*64.8695996594294827.2666.4400.940.89Pro onlyC L M
M0025368.4296096794395013.1223.6090.820.84cap C L M
M00470*69.2396196994495226.4546.4540.850.85Pro onlyC L M
M00469*69.2396196994495226.3416.3410.870.87Pro onlyC L M
MA000369.2396196994495226.3416.3410.870.87AP2alphaC L M
M00314*68.4296196894495125.8675.8670.870.87Pro onlyC L M
M00313*68.4296196894495125.6735.6730.870.87Pro onlyC L M
M00315*68.4296196894495125.5965.5960.870.87Pro onlyC L M
M00634*73.8196297394595627.0577.0570.800.80Pro onlyC L M
MA000271.7996297094595316.8446.8440.840.84AML-1C L M
MA004873.8196397494695728.9178.9170.820.82Hen-1C L M
M0027773.8196397494695726.8856.8850.810.81Lmo2 complex C L M
M0027175.0096496994795215.4165.4160.830.83AML-1a C L M
M0025376.3296597294895525.4655.4650.920.92cap C L M
M00644*75.6896597194895426.4516.4510.850.85Pro onlyC L M
M00695*75.6896597194895416.0476.0470.850.85Pro onlyC L M
M00644*75.6896697294995518.5748.5740.940.94Pro onlyC L M
M00803*75.0097097595395824.9326.3100.820.88Pro onlyC L M
M00915*69.7797698895997129.7849.0500.880.86Pro onlyC L M
M00470*74.3697798596096818.1517.6240.900.89Pro onlyC L M
M00469*74.3697798596096818.2848.2840.930.93Pro onlyC L M
MA000374.3697798596096818.2848.2840.930.93AP2alphaC L M
M00322*72.5097798696096916.1017.3990.810.85Pro onlyC L M
M00428*68.4298098796397014.7274.1300.840.81Pro onlyC L M
M00803*69.4498198696496918.8958.8951.001.00Pro onlyC L M
M00803*69.4498198696496925.5175.5170.850.85Pro onlyC L M
M00976*64.1098198996497215.6145.9610.800.82Pro onlyC L M
M00322*62.5098199096497319.5457.6060.910.85Pro onlyC only
M00322*62.5098199096497327.7538.1410.860.87Pro onlyC only
M00716*63.1698298996597216.70010.0470.861.00Pro onlyC L M
M00803*63.8998398896697117.5177.5170.940.94Pro onlyC L M
M00803*63.8998398896697127.5177.5170.940.94Pro onlyC L M
M00716*57.8999199899299916.9667.5790.870.90Pro onlyC only
M00803*58.3399299799399818.2438.8950.971.00Pro onlyC only
M00428*57.899931000994100127.6804.4590.950.83Pro onlyC only
M00720*66.671007101510081016111.3688.1820.980.87Pro onlyC only
M0025365.79100710141008101525.1865.8970.910.94cap C only
M00695*64.86100710131008101415.7795.7790.840.84Pro onlyC only
M0027163.89101210171013101815.8325.4160.840.83AML-1a C only
M00469*61.54101510231016102425.8236.2650.850.87Pro onlyC only
MA000361.54101510231016102425.8236.2650.850.87AP2alphaC only
M00695*59.46101910251020102615.8239.7700.841.00Pro onlyC only
M00803*58.33102110261022102718.8956.2431.000.88Pro onlyC only
M00803*58.33102110261022102725.5174.5730.850.80Pro onlyC only
M00695*62.16102410301025103119.7705.6631.000.84Pro onlyC only
M00803*58.33102610311027103216.2434.8640.880.82Pro onlyC only
M00976*51.28106310711045105316.6545.5580.840.80Pro onlyC only
M0019651.16106310751045105719.4597.9210.840.80Sp1 C only
M00716*50.00106410711046105315.6387.5790.820.90Pro onlyC only
M00931*50.00106510741047105618.3657.6230.830.81Pro onlyC only
M00470*51.28106610741048105625.3228.3080.810.91Pro onlyC only
M00469*51.28106610741048105626.1358.7830.860.95Pro onlyC only
MA000351.28106610741048105626.1358.7830.860.95AP2alphaC only
M00803*50.00106710721049105414.5436.8640.800.91Pro onlyC only
M00428*52.63106810751050105723.8663.8660.800.80Pro onlyC only
M00986*52.78106910741051105617.0137.0130.960.96Pro onlyC only
M00695*56.76107010761052105815.5555.5550.830.83Pro onlyC only
M00803*55.56107010751052105714.8084.8080.810.81Pro onlyC only
M00986*55.56107010751052105714.7224.7220.850.85Pro onlyC only
M00649*55.26107010771052105918.1558.7740.850.88Pro onlyC only
M00716*55.26107110781053106016.7007.1020.860.88Pro onlyC only
M00803*52.78107210771054105918.8955.4361.000.84Pro onlyC only
M00469*51.28109311011066107425.7298.9050.850.95Pro onlyC only
MA000351.28109311011066107425.7298.9050.850.95AP2alphaC only
M00470*53.85110611141075108315.1375.4520.810.82Pro onlyC only
M00986*50.00111111161080108516.1774.4810.920.84Pro onlyC only
M00915*65.12113111431088110019.4756.8940.870.80Pro onlyC L M
M00428*63.16113411411091109825.0656.5480.850.91Pro onlyC L M
M00470*61.541134114210911099110.9155.2910.990.81Pro onlyC L M
M00470*61.541134114210911099210.4197.8350.970.89Pro onlyC L M
M00469*61.541134114210911099110.1054.3130.990.80Pro onlyC L M
M00469*61.54113411421091109929.6918.1920.980.93Pro onlyC L M
MA000361.541134114210911099110.1054.3130.990.80AP2alphaC L M
MA000361.54113411421091109929.6918.1920.980.93AP2alphaC L M

LAGAN

LAGAN ALIGNMENT

                   10            20        30        40        50        60        70        80        90     
seq1      c-ttgagcaaattgg----tggatggtggtgTCATTTACTGaaacggaaaatacaggatgagcagattaaaggtgaacatgcaatgaatgaaattttcaa
             ||| |   ||      | ||   |  |||||||||   ||  ||     ||      |||   |      | ||     |||||||     |||   
seq2      tactgaacctcttataaccttgaccatcttgTCATTTAAAAaagagggtgtcaccctggtagccagtc-----ttaaagcaaaatgaatcctcattttgg
                  10        20        30        40        50        60             70        80        90     

            100       110       120       130       140       150       160       170       180       190     
seq1      ttttgtgtatgttggtctgagatgccttttggatacatgttgtatacatgcttacatgagtaagcaactggtatgaattgacggagagggaggaaggaca
             | || |     |    | |       ||  || || |   |    | | ||  | ||||  |  ||    ||| |            || || | | 
seq2      aagtctgcactcaaggaaaaaaaaaagcatgactaaatatccaac---ttcctagctcagtagtcgtctttcctgagt------------agaaaaggct
            100       110       120       130       140          150       160       170                   180

                                200       210       220       230       240       250       260       270     
seq1      ggg--------------------cagaagatagagctgTGGGAGTCATCGGTTCCTtgacagaatttacagcgtggtaatggatagactctatgctatcc
           ||                    ||   |  || |||| ||  |||| |   | |  ||  |  | |  ||  ||  |      |  ||  |      ||
seq2      cggagtgttttaatccccttttccacgtggaagggctgGGGATGTCACCCACTGCCagagtgcttgtctagtatgccacaaaggatgcttgagatgtccc
                 190       200       210       220       230       240       250       260       270       280

            280       290       300       310       320       330       340       350                      360
seq1      atctatggaacaacacatctggagAAGAGAGaagagctggggaggctggactgtagccttgggagtggctattaaaataggaga---------------a
                || ||||| |      | ||  |||| ||   |  | ||     |   | |    |  | |     || |||||  ||               |
seq2      g-----gggacaacgcggtgaaacAACTGAGaggaaaggaagggggcaagcaaaaac---agaggagtaccctacaatagatgacggctagactagccca
                      290       300       310       320       330          340       350       360       370  

                 370       380       390           400       410       420       430       440       450      
seq1      ggggtggagcggaagggagagaggaactatgga----gtgcttagcaagagaagaaagtgttttaaggatggggatGATAAACTGCATTGAaaGCCACTG
          |||   | ||  |  |  |||  | | | ||        | || |  | |||||  |       ||| |    | |||  ||||||  |||     ||||
seq2      gggaaagtgcatagagaggaggaggagtctgtgcacgtagttttgggacagaagggatgaaaggaagaaaaaaggtGAGCAACTGCTCTGAggATAACTG
               380       390       400       410       420       430       440       450       460       470  

           460       470       480       490       500       510       520       530       540                
seq1      AGAGGTGGAGAAAAAATCAGGGcagagaagtaataaaaggcatcagcaacatggaagtcactggtgactcgcgaaaggcgatcac---------------
          | |||| ||||||| ||    ||| ||||    ||||  |  |  ||    ||| ||   || |  |  |  ||||     |  |               
seq2      AAAGGTTGAGAAAAGATTGACGcacagaa----taaagagggttggctcagtgggagagccttggtatgcaagaaaccgagttccacccccacaaggggg
               480       490       500           510       520       530       540       550       560       5

                                              550       560       570                580       590       600  
seq1      -------------------ctttggtg-----------tgTAGGGCACAAAAgCCTGGGGGGGTAAAg---------agAGAGTGGAAAGTAAGAATGTC
                             ||||||             || |||||||| ||   ||  ||||| |           |||| | | ||||||||  | | 
seq2      cagaggaggggaaacatggctttggcaacatggagagatgAAGGGCACAGAAaTTTGACGGGGTCAGtcaaagatctagAGTGGGCAAAGTAAGGGTTTG
          70       580       590       600       610       620       630       640       650       660       6

               610       620       630       640       650       660       670       680       690       700  
seq1      GAGACAGTCGactattattgccattttatgaatgaagaaaccgaggctcaatatttgactgtctcattcaaggtgaaagccagtggggtcagatcctgga
          |||||||  ||  || |  | ||                                                                   |   ||   |
seq2      GAGACAGGTGatcatcaccgaca-------------------------------------------------------------------aaccccaata
          70       680       690                                                                          700 

               710       720           730       740       750       760       770       780       790       8
seq1      cctagaatccatgcaatgattt----gtgcacatcgcctattgaagagagagatccaattCTCTTCCAaaacGTAAAAGCCAACACTTccctcAAAGGAG
          |  || | | | ||| || | |    | |     |  | |   | ||||      ||   ||||||| |      |||||||||    || ||||   | 
seq2      cggagtaccaaagcagtgttgttatagggaggcgcagccacccaggagattcccgcagcgCTCTTCCGacctTCGAAAGCCAACCAACccttcAACTAAA
                710       720       730       740       750       760       770       780       790       800 

          00            810       820       830       840       850       860       870       880       890   
seq1      Gcttcgag-----TTAAATCATCCTTTCACGATGCcgcttccattttaaagaaaaaaaaaaaaaaacgagaaggcctggtgcgggataggaatgagccga
          |  |  ||     | ||||||||||| || || || |     |  ||  ||||                                             | 
seq2      GgatgcaggggccTGAAATCATCCTTCCAAGAAGCagtcataaccttggagaa---------------------------------------------gg
                810       820       830       840       850                                                   

              900       910       920                       930       940       950           960       970   
seq1      ggagctactGGCCCTctcggtcggggg----------------aAGACCCGCCCCTTTTCCGCAGCCCGAGCC----cggcgcagTCCACTGCGGCTGCG
             ||| |  ||||| || |  | | |                ||| |||  ||| |   ||| || ||||||    | | ||    |||||||||||||
seq2      ccggcttccCGCCCTgtctgcagagcgggcgagcgcgctcgcgaAGGCCCCGCCCCTCGGCGCCGCGCGAGCCtcccctgagcgcCGCACTGCGGCTGCG
           860       870       880       890       900       910       920       930       940       950      

              980          990      1000      1010      1020      1030      1040      1050      1060      1070
seq1      CGAGCCTGGCGCGCGC---GGGGCGGGAACGCGGAAGGGGCTGgggttgcggcgcggcggcgaggaccAGACCGGGGGCGGGgccggtagtgggagtgcg
          |  ||| ||||||||    |||||||| |||||||||| || |           |||| | |  | |     ||| ||||| || |  |   |     ||
seq2      CCGGCCGGGCGCGCGGaggGGGGCGGGGACGCGGAAGGCGCGG-----------cggccggggaggctGCGGCGGCGGCGGCgcggtgaagcgagagccg
           960       970       980       990                 1000      1010      1020      1030      1040     

                1080      1090      1100      1110      1120      1130      1140      1150      1160      1170
seq1      gggcgcgcggtgacagcgcggggttggcggcgtgggacCCAGGGGGCgacagaggcagcaGCAGCCCGAGGCCtgaggagaggagaccggcggcggcggc
            ||||| || ||  |  ||                  || |  |||| | ||||  || |  || ||||||||||||   ||            |  ||
seq2      acgcgcggggcgaggggacg------------------CCCGACGGCgtccgagggcgcgGTGGCGCGAGGCCtgagggaggg------------gacgc
           1050      1060                        1070      1080      1090      1100      1110                 

           
seq1      a
           
seq2      g
           

LAGAN ALIGNED HITS

MatrixIdentitySeq1 fromSeq1 toSeq2 fromSeq2 toStrandScore1Score2Rel.Score1Rel.Score2FactorFound by:
C = CONREAL
L = LAGAN
M = MAVID
B = BLASTZ
M0025350.002734323915.0164.1310.900.86cap L C
M0010151.352834333923.6675.0210.840.90CdxA L C
M00496*50.002835334016.7234.2440.920.81Pro onlyL C
M00498*50.002835334016.2585.3940.900.87Pro onlyL C
M0010051.352935344014.1916.2690.810.92CdxA L C
M0010151.352935344013.8204.5790.850.88CdxA L C
M0010151.353036354115.8613.6760.930.84CdxA L C
M0017251.2221422421922929.3557.8780.900.85AP-1 L M
M0011350.0021522622023128.5749.6710.850.88CREB L M
M00926*50.0021622322122819.4605.5990.930.80Pro onlyL M
M00801*52.7821822322322815.6786.5580.860.89Pro onlyL M
MA006752.6321822522323014.6235.0600.830.84Pax-2L M
M0028553.4921923122423617.3556.4470.870.84TCF11 L M
MA008952.7821922422422928.6925.9190.990.87TCF11-MafGL M
M0025352.6322022722523214.6885.2670.890.91cap L M
M00747*51.3530030630030625.6586.0750.810.82Pro onlyL B
MA010952.6343344044945625.4584.9840.840.82RUSH1-alfaL C M
M0018355.0043444345045916.0977.3930.830.89c-Myb L C M
M0025357.8943544245145824.7785.2310.890.91cap L C M
M00773*60.9843644645246225.9786.4910.820.84Pro onlyL C M
M00913*58.9743644445246016.2786.9250.870.90Pro onlyL C M
M00630*58.9743744545346116.2635.4300.850.81Pro onlyL C M
M0025360.5344044745646322.9124.1650.810.87cap L C M
M00805*61.1144244745846327.0165.7160.880.83Pro onlyL C M
M0025368.4245045746647325.5765.5990.930.93cap L C M
M00313*71.0545245946847525.6735.5230.870.86Pro onlyL C M
M00314*71.0545245946847525.8675.2350.870.84Pro onlyL C M
M00315*71.0545245946847525.5965.3120.870.85Pro onlyL C M
M0041865.8545246246847827.1077.5350.800.82TGIF L C M
MA010361.1145846347447926.5035.3130.890.84deltaEF1L C M
M0010963.6445947247548818.5809.7820.870.90C/EBPbeta L C M
M00770*66.6745947047548616.3117.2360.840.87Pro onlyL C M
M00912*66.6745947047548627.4378.8070.850.89Pro onlyL C M
M00690*65.7946046747648325.5046.2010.840.86Pro onlyL C M
M00962*64.1046347147948715.4646.3920.830.87Pro onlyL C M
M00493*65.7946447148048726.1315.8140.880.87Pro onlyL C M
M00494*65.7946447148048725.4394.5780.840.81Pro onlyL C M
M00496*65.7946447148048725.2256.7310.860.92Pro onlyL C M
M00497*65.7946447148048724.1464.4510.820.83Pro onlyL C M
M00498*65.7946447148048725.2336.0970.870.90Pro onlyL C M
M00499*65.7946447148048726.7827.6810.930.97Pro onlyL C M
M00500*65.7946447148048725.3836.0110.860.88Pro onlyL C M
MA010965.7946447148048727.1538.1960.910.96RUSH1-alfaL C M
M00921*65.7946547248148825.7386.2000.830.85Pro onlyL C M
M00962*66.6746547348148915.4794.9220.830.81Pro onlyL C M
M00445*65.1246647848249427.3916.5010.830.80Pro onlyL C M
M00734*69.23466474482490111.9216.4291.000.83Pro onlyL C M
M0037768.2946747748349317.5037.4140.840.84Pax-4 L C M
M00964*50.0055256360962015.1595.5780.800.81Pro onlyL C M
M00428*52.6355356061061723.9523.9520.810.81Pro onlyL C M
M00921*52.6355356061061725.5955.5950.830.83Pro onlyL C M
M00962*51.2855356161061815.7735.2800.850.83Pro onlyL C M
M00986*50.0055355861061514.1054.1050.820.82Pro onlyL C M
M00646*52.6355456161161817.6808.1500.890.91Pro onlyL C M
M00716*52.6355456161161815.8385.9740.830.83Pro onlyL C M
M00921*55.2655556261261926.3996.8610.860.88Pro onlyL C M
M00428*57.8956557262262914.0094.5110.810.83Pro onlyL C M
M00986*52.7857057562763214.2235.7060.830.90Pro onlyL C M
M00646*55.2657157862863516.72510.4330.851.00Pro onlyL C
M00986*52.7857157662863315.4304.9180.890.86Pro onlyL C
M0008352.6358258964865516.3966.6280.820.83MZF1 L C M
M0015958.1458259464866017.6115.2200.880.80C/EBP L C M
M00486*61.5458659465266014.8725.1830.840.85Pro onlyL C M
M00750*62.1658759365365918.4206.8010.950.89Pro onlyL C M
MA003263.1658759465366017.2096.9860.990.97FREAC-3L C M
M0014864.8658959565566116.9986.9980.920.92SRY L C M
MA007568.5759059465666014.7664.7660.820.82S8L C M
MA008066.6759159665766214.3914.3910.820.82SPI-1L C M
M00690*68.4259760466367026.0916.4730.860.87Pro onlyL C M
M00974*63.4159960966567517.6507.2420.840.83Pro onlyL C M
M0041961.9060161266767814.7425.3780.800.82MEIS1 L C M
MA010965.7960361066967625.1235.7290.830.85RUSH1-alfaL C M
M00792*64.1060461267067816.6195.8560.900.86Pro onlyL C M
MA010063.1660561267167816.3176.4010.840.84c-MYB_1L C M
M00496*57.8975976676276915.3956.0350.860.89Pro onlyL C M
M00497*57.8975976676276915.8996.8360.900.94Pro onlyL C M
M00498*57.8975976676276915.5334.6680.880.85Pro onlyL C M
M00499*57.8975976676276917.2116.7880.950.93Pro onlyL C M
M00500*57.8975976676276915.9764.8380.880.84Pro onlyL C M
MA008055.5676176676476926.4838.7110.911.00SPI-1L C M
MA009855.5676176676476916.3007.7970.931.00c-ETSL C M
M00486*58.9777177977478215.8346.2130.880.90Pro onlyL C M
M00809*58.1477478677778927.9169.2840.800.83Pro onlyL C M
M00967*61.5477478277778515.2625.2620.800.80Pro onlyL C M
MA004157.1477578677878927.9717.2890.830.81HFH-2L C M
M00624*59.4677678277978515.5605.5600.860.86Pro onlyL C M
M00313*50.0079279979580225.1084.3950.840.81Pro onlyL M
M00315*50.0079279979580224.9004.2340.830.80Pro onlyL M
M00462*60.0080781681582425.7776.0240.850.86Pro onlyL C M
M00925*61.5480781581582327.9166.0560.880.82Pro onlyL C M
MA003857.5080881781682518.4347.7980.880.86GfiL C M
M0039659.4680981581782323.8033.8030.810.81En-1 L C M
MA003558.3380981481782224.2654.2650.850.85GATA-1L C M
MA003758.3380981481782225.1625.1620.860.86GATA-3L C M
M0007655.0081081981882724.3774.3770.810.81GATA-2 L C M
M0014859.4681081681882415.5265.5260.860.86SRY L C M
M00462*55.0081081981882724.6454.6450.810.81Pro onlyL C M
M00630*56.4181081881882625.2605.2600.810.81Pro onlyL C M
MA003660.0081081481882224.0004.0000.850.85GATA-2L C M
M0028551.1681182381983117.5706.8690.880.85TCF11 L C M
M00624*56.7681181781982514.5244.5240.810.81Pro onlyL C M
MA008958.3381181681982426.8116.8110.910.91TCF11-MafGL C M
MA009558.3381181681982415.1235.1230.830.83Yin-YangL C M
M0025355.2681281982082716.4006.4000.960.96cap L C M
M00655*56.7681281882082617.8137.8130.910.91Pro onlyL C M
M00971*55.2681281982082715.8345.8340.820.82Pro onlyL C M
MA003558.3381281782082525.4985.4980.910.91GATA-1L C M
MA003660.0081381782182525.9785.9780.960.96GATA-2L C M
MA009858.3381381882182617.2297.2290.970.97c-ETSL C M
M00743*60.5382182882983616.5037.8120.820.87Pro onlyL C M
M00986*50.0090390886687123.5934.4810.800.84Pro onlyL C
M00491*60.4792293490191328.04111.5630.800.88Pro onlyL C M
M00986*55.5692392890290726.4013.8340.930.81Pro onlyL C M
MA007960.0092493390391226.5708.5980.820.89SP1L C M
M00720*61.5492593390491227.5308.2700.840.87Pro onlyL C M
M00986*61.1192893390791225.2894.7220.880.85Pro onlyL C M
M00428*63.1693394091291915.1464.6850.850.84Pro onlyL C M
M00431*63.1693394091291916.2884.9940.850.81Pro onlyL C M
M00695*56.7693794391692227.0075.8230.890.84Pro onlyL C M
M00428*50.0094294992192824.7366.2180.840.90Pro onlyL C M
M00803*50.0094595092492924.8084.8080.810.81Pro onlyL C M
M0025365.7995996694294923.7454.1040.850.86cap L C M
M00468*64.8695996594294827.2666.4400.940.89Pro onlyL C M
M0025368.4296096794395013.1223.6090.820.84cap L C M
M00313*68.4296196894495125.6735.6730.870.87Pro onlyL C M
M00314*68.4296196894495125.8675.8670.870.87Pro onlyL C M
M00315*68.4296196894495125.5965.5960.870.87Pro onlyL C M
M00469*69.2396196994495226.3416.3410.870.87Pro onlyL C M
M00470*69.2396196994495226.4546.4540.850.85Pro onlyL C M
MA000369.2396196994495226.3416.3410.870.87AP2alphaL C M
M00634*73.8196297394595627.0577.0570.800.80Pro onlyL C M
MA000271.7996297094595316.8446.8440.840.84AML-1L C M
M0027773.8196397494695726.8856.8850.810.81Lmo2 complex L C M
MA004873.8196397494695728.9178.9170.820.82Hen-1L C M
M0027175.0096496994795215.4165.4160.830.83AML-1a L C M
M0025376.3296597294895525.4655.4650.920.92cap L C M
M00644*75.6896597194895426.4516.4510.850.85Pro onlyL C M
M00695*75.6896597194895416.0476.0470.850.85Pro onlyL C M
M00644*75.6896697294995518.5748.5740.940.94Pro onlyL C M
M00803*75.0097097595395824.9326.3100.820.88Pro onlyL C M
M00915*72.0997698895997129.7849.0500.880.86Pro onlyL C M
M00322*75.0097798696096916.1017.3990.810.85Pro onlyL C M
M00469*74.3697798596096818.2848.2840.930.93Pro onlyL C M
M00470*74.3697798596096818.1517.6240.900.89Pro onlyL C M
MA000374.3697798596096818.2848.2840.930.93AP2alphaL C M
M00428*71.0598098796397014.7274.1300.840.81Pro onlyL C M
M00803*72.2298198696496918.8958.8951.001.00Pro onlyL C M
M00803*72.2298198696496925.5175.5170.850.85Pro onlyL C M
M00976*69.2398198996497215.6145.9610.800.82Pro onlyL C M
M00716*68.4298298996597216.70010.0470.861.00Pro onlyL C M
M00803*66.6798398896697117.5177.5170.940.94Pro onlyL C M
M00803*66.6798398896697127.5177.5170.940.94Pro onlyL C M
M0000862.5099099997698519.10911.2070.900.97Sp1 L M
M00649*63.16990997976983110.55710.5570.940.94Pro onlyL M
M00695*64.8699099697698219.5029.5020.990.99Pro onlyL M
M00803*63.8999099597698114.8084.8080.810.81Pro onlyL M
M00931*62.50990999976985111.46913.6580.910.96Pro onlyL M
M00938*60.87990100597699119.5029.0020.830.82Pro onlyL M
M00986*63.8999099597698114.7224.7220.850.85Pro onlyL M
MA007962.5099099997698518.56110.5350.890.95SP1L M
M00716*65.7999199897798416.9667.1020.870.88Pro onlyL M
M00803*66.6799299797898318.2438.2430.970.97Pro onlyL M
M00428*65.79993100097998627.6803.9580.950.81Pro onlyL M
M00333*65.12994100698099217.3918.5550.820.85Pro onlyL M
M00986*66.6799499998098517.1157.5240.960.98Pro onlyL M
M00938*65.22996101198299719.9798.6850.840.81Pro onlyL M
M00716*68.42997100498399016.5148.0710.850.92Pro onlyL M
MA002870.00998100798499317.0067.4500.850.86Elk-1L M
M0010872.501000100998699519.1438.3340.850.82NRF-2 L M
M00428*73.681000100798699324.1844.1840.820.82Pro onlyL M
M00658*73.681000100798699316.6886.6880.830.83Pro onlyL M
MA006272.501000100998699519.1438.3340.850.82NRF-2L M
MA008172.971000100698699215.7075.7070.840.84SPI-BL M
M00695*75.681001100798799315.4545.4540.830.83Pro onlyL M
M00971*73.681001100898799428.0808.0800.890.89Pro onlyL M
M00492*73.681002100998899528.4487.2260.910.87Pro onlyL M
M00496*73.681002100998899525.4385.5170.860.87Pro onlyL M
M00497*73.681002100998899526.9777.0650.950.95Pro onlyL M
M00498*73.681002100998899524.6685.2330.850.87Pro onlyL M
M00499*73.681002100998899525.7275.6850.890.89Pro onlyL M
M00500*73.681002100998899525.9026.6730.870.90Pro onlyL M
M00655*72.971002100898899426.1246.1240.840.84Pro onlyL M
MA008075.001002100798899318.7118.7111.001.00SPI-1L M
MA009875.001002100798899327.7977.7971.001.00c-ETSL M
M00704*75.001003100898999415.1175.1170.820.82Pro onlyL M
MA010375.001005101099199624.4595.6290.810.86deltaEF1L M
M00695*67.571007101399399915.7795.6630.840.84Pro onlyL M
M00982*50.001039105210141027211.71812.2470.840.85Pro onlyL only
M00469*51.28104110491016102427.8506.2650.920.87Pro onlyL only
M00470*51.28104110491016102428.5995.9260.920.83Pro onlyL only
MA000351.28104110491016102427.8506.2650.920.87AP2alphaL only
M00469*53.85110911171066107427.0168.9050.890.95Pro onlyL M
M00470*53.85110911171066107427.7188.7350.890.92Pro onlyL M
MA000353.85110911171066107427.0168.9050.890.95AP2alphaL M
M00915*65.12113111431088110019.4756.8940.870.80Pro onlyL C M
M00428*63.16113411411091109825.0656.5480.850.91Pro onlyL C M
M00469*61.541134114210911099110.1054.3130.990.80Pro onlyL C M
M00469*61.54113411421091109929.6918.1920.980.93Pro onlyL C M
M00470*61.541134114210911099110.9155.2910.990.81Pro onlyL C M
M00470*61.541134114210911099210.4197.8350.970.89Pro onlyL C M
MA000361.541134114210911099110.1054.3130.990.80AP2alphaL C M
MA000361.54113411421091109929.6918.1920.980.93AP2alphaL C M

MAVID

MAVID ALIGNMENT

                                    10        20        30        40        50                              60
seq1      ------------------cttgagcaaattggtggatggtggtgtcatttactgaaacggaaaatacaggatg----------------------agcag
                            ||||| ||             |  ||||||||          |||| | ||| ||                      |||| 
seq2      tactgaacctcttataaccttgacca-------------tcttgtcattt----------aaaaaagagggtgtcaccctggtagccagtcttaaagcaa
                  10        20                     30                  40        50        60        70       

                           70        80        90       100       110       120       130       140       150 
seq1      attaaag---------gtgaacatgcaatgaATGAAATTttcaattttgtgtatgttggtctgagatgccttttggatacatgttgtatacatgcttaca
          | | ||          |  |   |||| | || ||||     ||   ||  ||  |                    || ||  ||         | ||  
seq2      aatgaatcctcattttggaagtctgcactcaAGGAAAAAaaaaagcatgactaaat--------------------atccaactt---------cctagc
           80        90       100       110       120       130                           140                1

                160       170              180                         190       200       210       220      
seq1      tgagtaagcaactggtatgaattga-------cggagagg------------------gaggaaggacagggcagaagatagagctgTGGGAGTCATCGG
          | ||||  |  ||    ||| | ||       ||||| |                   | ||||||                 |||| ||  |||| |  
seq2      tcagtagtcgtctttcctgagtagaaaaggctcggagtgttttaatccccttttccacgtggaagg-----------------gctgGGGATGTCACCCA
          50       160       170       180       190       200       210                        220       230 

           230       240       250         260       270       280               290       300                
seq1      TTCCTtgacagaatttacagcgtggta--atggatagactctatgctatccatctatggaacaac--------acatctggagaagagag----------
           | |  ||  |  | |  ||  ||  |  | ||||       |||       ||   || |||||        ||| || |||| || ||          
seq2      CTGCCagagtgcttgtctagtatgccacaaaggatgcttgagatg-------tcccggggacaacgcggtgaaacaact-gagaggaaaggaagggggca
                240       250       260       270              280       290       300        310       320   

              310                          320       330       340       350       360                       3
seq1      ---aagagctggggag-------------------gctggactgtagccttgggagtggctattaaaataggagaaggggt----------------gga
             || | | | ||||                   ||| |||  |||||  ||||  |   ||  | | ||||| ||| ||                || 
seq2      agcaaaaacagaggagtaccctacaatagatgacggctagac--tagcccagggaaagtgcat--agagaggaggaggagtctgtgcacgtagttttggg
              330       340       350       360         370       380         390       400       410       42

          70        380       390       400       410       420       430       440       450       460       
seq1      gCGGAAGgga-gagaggaactatggagtgcttagcaagagaagaaagtgttttaaggatggggatGATAAACTGCATTGAaaGCCACTGAGAGGTGGAGA
           | ||||||| || ||||                    |||| |||                | |||  ||||||  |||     ||||| |||| ||||
seq2      aCAGAAGggatgaaagga--------------------agaaaaaa----------------ggtGAGCAACTGCTCTGAggATAACTGAAAGGTTGAGA
          0       430                           440                       450       460       470       480   

          470       480       490       500       510       520       530                                     
seq1      AAAAATCAGGGcagagaagtaataaaaggcatcagcaacatggaagtcactggtgactcgcgaaa--------------------------------ggc
          ||| ||    ||| ||    ||||||  |  |  ||    ||| ||   || |  |  |  ||||                                || 
seq2      AAAGATTGACGcacag----aataaagagggttggctcagtgggagagccttggtatgcaagaaaccgagttccacccccacaagggggcagaggagggg
              490           500       510       520       530       540       550       560       570       58

            540                    550       560       570            580           590       600       610   
seq1      gatcac--ctttggtg-----------tgTAGGGCACAAAAgCCTGGGGGGGT-----aaaga----gAGAGTGGAAAGTAAGAATGTCGAGACAGTCGa
           | ||   ||||||             || |||||||| ||   ||  |||||     |||||    ||| | | ||||||||  | | |||||||  ||
seq2      aaacatggctttggcaacatggagagatgAAGGGCACAGAAaTTTGACGGGGTcagtcaaagatctagAGTGGGCAAAGTAAGGGTTTGGAGACAGGTGa
          0       590       600       610       620       630       640       650       660       670       68

              620       630       640       650       660       670       680       690       700       710   
seq1      ctattattgccattttatgaatgaagaaaccgaggctcaatatttgactgtctcattcaaggtgaaagccagtggggtcagatcctggacctagaatcca
            || |  |               | |||||                                                    ||   ||  || | | |
seq2      tcatcaccg---------------acaaacc----------------------------------------------------ccaatacggagtaccaa
          0                      690                                                           700       710  

              720           730       740       750       760       770       780       790       800         
seq1      tgcaatgattt----gtgcacatcgcctattgaagagagagatccaattCTCTTCCAaaacGTAAAAGCCAACACTTccctcAAAGGAGGcttcgag---
           ||| || | |    | |     |  | |   | ||||      ||   ||||||| |      |||||||||    || ||||   | |  |  ||   
seq2      agcagtgttgttatagggaggcgcagccacccaggagattcccgcagcgCTCTTCCGacctTCGAAAGCCAACCAACccttcAACTAAAGgatgcagggg
               720       730       740       750       760       770       780       790       800       810  

             810       820       830       840       850       860       870       880          890       900 
seq1      --TTAAATCATCCTTTCACGATGCcgcttccattttaaagaaaaaaaaaaaaaaacgagaaggcctggtgcgggataggaatg---agccgaggagctac
            | ||||||||||| || || ||                   |   | ||     ||||||||| | | |  |    |  ||   ||| |  ||||   
seq2      ccTGAAATCATCCTTCCAAGAAGC-------------------agtcataaccttggagaaggccggcttcccgccctgtctgcagagcgggcgagc---
               820       830                          840       850       860       870       880       890   

                910       920       930       940       950           960       970       980          990    
seq1      tggccctctcggtcggGGGAAGACCCGCCCCTTTTCCGCAGCCCGAGCC----cggcgcagTCCACTGCGGCTGCGCGAGCCTGGCGCGCGC---GGGGC
            || |||        | |||| |||  ||| |   ||| || ||||||    | | ||    ||||||||||||||  ||| ||||||||    |||||
seq2      --gcgctc--------GCGAAGGCCCCGCCCCTCGGCGCCGCGCGAGCCtcccctgagcgcCGCACTGCGGCTGCGCCGGCCGGGCGCGCGGaggGGGGC
                           900       910       920       930       940       950       960       970       980

            1000      1010      1020      1030      1040      1050      1060      1070      1080      1090    
seq1      GGGAACGCGGAAGGGGCTGGggttgcggcGCGGCGGcgaggaccagaccgggggcggggccggtagtgggagtgcggggcgcgcggtgacagcgcggggt
          ||| |||||||||| || | ||   ||| | ||| |||          ||| ||||| | ||||   | ||| ||  | ||||||| |  ||        
seq2      GGGGACGCGGAAGGCGCGGCgg--ccgggGAGGCTGcg---------gcggcggcggcg-cggtgaagcgagagc-cgacgcgcggggcgag--------
                 990      1000        1010               1020       1030      1040       1050                 

            1100       1110      1120      1130      1140      1150      1160      1170 
seq1      tggcggcgtgggac-CCAGGGGGCgacagaggcagcaGCAGCCCGAGGCCtgaggagaggagaccggcggcggcggca
                   ||||| || |  |||| | ||||  || |  || |||||||||||| |||| |||           || 
seq2      ---------gggacgCCCGACGGCgtccgagggcgcgGTGGCGCGAGGCCtgagg-gaggggac-----------gcg
                1060      1070      1080      1090      1100       1110                 

MAVID ALIGNED HITS

MatrixIdentitySeq1 fromSeq1 toSeq2 fromSeq2 toStrandScore1Score2Rel.Score1Rel.Score2FactorFound by:
C = CONREAL
L = LAGAN
M = MAVID
B = BLASTZ
M00493*50.00839010911625.2957.3660.840.94Pro onlyM only
M00494*50.00839010911626.3337.6130.880.94Pro onlyM only
M00496*50.00839010911624.9095.9010.840.88Pro onlyM only
M00498*50.00839010911623.6996.0970.810.90Pro onlyM only
M00499*50.00839010911624.0686.5630.820.93Pro onlyM only
M00500*50.00839010911626.6996.7460.900.90Pro onlyM only
M0017251.2221422421922929.3557.8780.900.85AP-1 M L
M0011350.0021522622023128.5749.6710.850.88CREB M L
M00926*50.0021622322122819.4605.5990.930.80Pro onlyM L
M00801*52.7821822322322815.6786.5580.860.89Pro onlyM L
MA006752.6321822522323014.6235.0600.830.84Pax-2M L
M0028553.4921923122423617.3556.4470.870.84TCF11 M L
MA008952.7821922422422928.6925.9190.990.87TCF11-MafGM L
M0025352.6322022722523214.6885.2670.890.91cap M L
MA008050.0037037542142618.7115.6281.000.87SPI-1M only
MA009850.0037037542142627.7973.8221.000.82c-ETSM only
MA010952.6343344044945625.4584.9840.840.82RUSH1-alfaM C L
M0018355.0043444345045916.0977.3930.830.89c-Myb M C L
M0025357.8943544245145824.7785.2310.890.91cap M C L
M00773*60.9843644645246225.9786.4910.820.84Pro onlyM C L
M00913*58.9743644445246016.2786.9250.870.90Pro onlyM C L
M00630*58.9743744545346116.2635.4300.850.81Pro onlyM C L
M0025360.5344044745646322.9124.1650.810.87cap M C L
M00805*61.1144244745846327.0165.7160.880.83Pro onlyM C L
M0025368.4245045746647325.5765.5990.930.93cap M C L
M00313*71.0545245946847525.6735.5230.870.86Pro onlyM C L
M00314*71.0545245946847525.8675.2350.870.84Pro onlyM C L
M00315*71.0545245946847525.5965.3120.870.85Pro onlyM C L
M0041865.8545246246847827.1077.5350.800.82TGIF M C L
MA010361.1145846347447926.5035.3130.890.84deltaEF1M C L
M0010963.6445947247548818.5809.7820.870.90C/EBPbeta M C L
M00770*66.6745947047548616.3117.2360.840.87Pro onlyM C L
M00912*66.6745947047548627.4378.8070.850.89Pro onlyM C L
M00690*65.7946046747648325.5046.2010.840.86Pro onlyM C L
M00962*64.1046347147948715.4646.3920.830.87Pro onlyM C L
M00493*65.7946447148048726.1315.8140.880.87Pro onlyM C L
M00494*65.7946447148048725.4394.5780.840.81Pro onlyM C L
M00496*65.7946447148048725.2256.7310.860.92Pro onlyM C L
M00497*65.7946447148048724.1464.4510.820.83Pro onlyM C L
M00498*65.7946447148048725.2336.0970.870.90Pro onlyM C L
M00499*65.7946447148048726.7827.6810.930.97Pro onlyM C L
M00500*65.7946447148048725.3836.0110.860.88Pro onlyM C L
MA010965.7946447148048727.1538.1960.910.96RUSH1-alfaM C L
M00921*65.7946547248148825.7386.2000.830.85Pro onlyM C L
M00962*66.6746547348148915.4794.9220.830.81Pro onlyM C L
M00445*65.1246647848249427.3916.5010.830.80Pro onlyM C L
M00734*69.23466474482490111.9216.4291.000.83Pro onlyM C L
M0037768.2946747748349317.5037.4140.840.84Pax-4 M C L
M00964*50.0055256360962015.1595.5780.800.81Pro onlyM C L
M00428*52.6355356061061723.9523.9520.810.81Pro onlyM C L
M00921*52.6355356061061725.5955.5950.830.83Pro onlyM C L
M00962*51.2855356161061815.7735.2800.850.83Pro onlyM C L
M00986*50.0055355861061514.1054.1050.820.82Pro onlyM C L
M00646*52.6355456161161817.6808.1500.890.91Pro onlyM C L
M00716*52.6355456161161815.8385.9740.830.83Pro onlyM C L
M00921*55.2655556261261926.3996.8610.860.88Pro onlyM C L
M00428*57.8956557262262914.0094.5110.810.83Pro onlyM C L
M00986*52.7857057562763214.2235.7060.830.90Pro onlyM C L
M0008352.6358258964865516.3966.6280.820.83MZF1 M C L
M0015958.1458259464866017.6115.2200.880.80C/EBP M C L
M00486*61.5458659465266014.8725.1830.840.85Pro onlyM C L
M00750*62.1658759365365918.4206.8010.950.89Pro onlyM C L
MA003263.1658759465366017.2096.9860.990.97FREAC-3M C L
M0014864.8658959565566116.9986.9980.920.92SRY M C L
MA007568.5759059465666014.7664.7660.820.82S8M C L
MA008066.6759159665766214.3914.3910.820.82SPI-1M C L
M00690*68.4259760466367026.0916.4730.860.87Pro onlyM C L
M00974*63.4159960966567517.6507.2420.840.83Pro onlyM C L
M0041961.9060161266767814.7425.3780.800.82MEIS1 M C L
MA010965.7960361066967625.1235.7290.830.85RUSH1-alfaM C L
M00792*64.1060461267067816.6195.8560.900.86Pro onlyM C L
MA010063.1660561267167816.3176.4010.840.84c-MYB_1M C L
M00496*57.8975976676276915.3956.0350.860.89Pro onlyM C L
M00497*57.8975976676276915.8996.8360.900.94Pro onlyM C L
M00498*57.8975976676276915.5334.6680.880.85Pro onlyM C L
M00499*57.8975976676276917.2116.7880.950.93Pro onlyM C L
M00500*57.8975976676276915.9764.8380.880.84Pro onlyM C L
MA008055.5676176676476926.4838.7110.911.00SPI-1M C L
MA009855.5676176676476916.3007.7970.931.00c-ETSM C L
M00486*58.9777177977478215.8346.2130.880.90Pro onlyM C L
M00809*58.1477478677778927.9169.2840.800.83Pro onlyM C L
M00967*61.5477478277778515.2625.2620.800.80Pro onlyM C L
MA004157.1477578677878927.9717.2890.830.81HFH-2M C L
M00624*59.4677678277978515.5605.5600.860.86Pro onlyM C L
M00313*50.0079279979580225.1084.3950.840.81Pro onlyM L
M00315*50.0079279979580224.9004.2340.830.80Pro onlyM L
M00462*60.0080781681582425.7776.0240.850.86Pro onlyM C L
M00925*61.5480781581582327.9166.0560.880.82Pro onlyM C L
MA003857.5080881781682518.4347.7980.880.86GfiM C L
M0039659.4680981581782323.8033.8030.810.81En-1 M C L
MA003558.3380981481782224.2654.2650.850.85GATA-1M C L
MA003758.3380981481782225.1625.1620.860.86GATA-3M C L
M0007655.0081081981882724.3774.3770.810.81GATA-2 M C L
M0014859.4681081681882415.5265.5260.860.86SRY M C L
M00462*55.0081081981882724.6454.6450.810.81Pro onlyM C L
M00630*56.4181081881882625.2605.2600.810.81Pro onlyM C L
MA003660.0081081481882224.0004.0000.850.85GATA-2M C L
M0028551.1681182381983117.5706.8690.880.85TCF11 M C L
M00624*56.7681181781982514.5244.5240.810.81Pro onlyM C L
MA008958.3381181681982426.8116.8110.910.91TCF11-MafGM C L
MA009558.3381181681982415.1235.1230.830.83Yin-YangM C L
M0025355.2681281982082716.4006.4000.960.96cap M C L
M00655*56.7681281882082617.8137.8130.910.91Pro onlyM C L
M00971*55.2681281982082715.8345.8340.820.82Pro onlyM C L
MA003558.3381281782082525.4985.4980.910.91GATA-1M C L
MA003660.0081381782182525.9785.9780.960.96GATA-2M C L
MA009858.3381381882182617.2297.2290.970.97c-ETSM C L
M00743*60.5382182882983616.5037.8120.820.87Pro onlyM C L
M00498*52.6391892589790425.2334.3690.870.83Pro onlyM C
M00500*52.6391892589790427.9694.4130.950.82Pro onlyM C
MA008050.0091892389790218.5794.8970.990.84SPI-1M C
M00491*60.4792293490191328.04111.5630.800.88Pro onlyM C L
M00986*55.5692392890290726.4013.8340.930.81Pro onlyM C L
MA007960.0092493390391226.5708.5980.820.89SP1M C L
M00720*61.5492593390491227.5308.2700.840.87Pro onlyM C L
M00986*61.1192893390791225.2894.7220.880.85Pro onlyM C L
M00428*63.1693394091291915.1464.6850.850.84Pro onlyM C L
M00431*63.1693394091291916.2884.9940.850.81Pro onlyM C L
M00695*56.7693794391692227.0075.8230.890.84Pro onlyM C L
M00428*50.0094294992192824.7366.2180.840.90Pro onlyM C L
M00803*50.0094595092492924.8084.8080.810.81Pro onlyM C L
M0025365.7995996694294923.7454.1040.850.86cap M C L
M00468*64.8695996594294827.2666.4400.940.89Pro onlyM C L
M0025368.4296096794395013.1223.6090.820.84cap M C L
M00313*68.4296196894495125.6735.6730.870.87Pro onlyM C L
M00314*68.4296196894495125.8675.8670.870.87Pro onlyM C L
M00315*68.4296196894495125.5965.5960.870.87Pro onlyM C L
M00469*69.2396196994495226.3416.3410.870.87Pro onlyM C L
M00470*69.2396196994495226.4546.4540.850.85Pro onlyM C L
MA000369.2396196994495226.3416.3410.870.87AP2alphaM C L
M00634*73.8196297394595627.0577.0570.800.80Pro onlyM C L
MA000271.7996297094595316.8446.8440.840.84AML-1M C L
M0027773.8196397494695726.8856.8850.810.81Lmo2 complex M C L
MA004873.8196397494695728.9178.9170.820.82Hen-1M C L
M0027175.0096496994795215.4165.4160.830.83AML-1a M C L
M0025376.3296597294895525.4655.4650.920.92cap M C L
M00644*75.6896597194895426.4516.4510.850.85Pro onlyM C L
M00695*75.6896597194895416.0476.0470.850.85Pro onlyM C L
M00644*75.6896697294995518.5748.5740.940.94Pro onlyM C L
M00803*75.0097097595395824.9326.3100.820.88Pro onlyM C L
M00915*72.0997698895997129.7849.0500.880.86Pro onlyM C L
M00322*75.0097798696096916.1017.3990.810.85Pro onlyM C L
M00469*74.3697798596096818.2848.2840.930.93Pro onlyM C L
M00470*74.3697798596096818.1517.6240.900.89Pro onlyM C L
MA000374.3697798596096818.2848.2840.930.93AP2alphaM C L
M00428*71.0598098796397014.7274.1300.840.81Pro onlyM C L
M00803*72.2298198696496918.8958.8951.001.00Pro onlyM C L
M00803*72.2298198696496925.5175.5170.850.85Pro onlyM C L
M00976*69.2398198996497215.6145.9610.800.82Pro onlyM C L
M00716*68.4298298996597216.70010.0470.861.00Pro onlyM C L
M00803*66.6798398896697117.5177.5170.940.94Pro onlyM C L
M00803*66.6798398896697127.5177.5170.940.94Pro onlyM C L
M0000862.5099099997698519.10911.2070.900.97Sp1 M L
M00649*63.16990997976983110.55710.5570.940.94Pro onlyM L
M00695*64.8699099697698219.5029.5020.990.99Pro onlyM L
M00803*63.8999099597698114.8084.8080.810.81Pro onlyM L
M00931*62.50990999976985111.46913.6580.910.96Pro onlyM L
M00938*60.87990100597699119.5029.0020.830.82Pro onlyM L
M00986*63.8999099597698114.7224.7220.850.85Pro onlyM L
MA007962.5099099997698518.56110.5350.890.95SP1M L
M00716*65.7999199897798416.9667.1020.870.88Pro onlyM L
M00803*66.6799299797898318.2438.2430.970.97Pro onlyM L
M00428*65.79993100097998627.6803.9580.950.81Pro onlyM L
M00333*65.12994100698099217.3918.5550.820.85Pro onlyM L
M00986*66.6799499998098517.1157.5240.960.98Pro onlyM L
M00938*65.22996101198299719.9798.6850.840.81Pro onlyM L
M00716*68.42997100498399016.5148.0710.850.92Pro onlyM L
MA002870.00998100798499317.0067.4500.850.86Elk-1M L
M0010872.501000100998699519.1438.3340.850.82NRF-2 M L
M00428*73.681000100798699324.1844.1840.820.82Pro onlyM L
M00658*73.681000100798699316.6886.6880.830.83Pro onlyM L
MA006272.501000100998699519.1438.3340.850.82NRF-2M L
MA008172.971000100698699215.7075.7070.840.84SPI-BM L
M00695*75.681001100798799315.4545.4540.830.83Pro onlyM L
M00971*73.681001100898799428.0808.0800.890.89Pro onlyM L
M00492*73.681002100998899528.4487.2260.910.87Pro onlyM L
M00496*73.681002100998899525.4385.5170.860.87Pro onlyM L
M00497*73.681002100998899526.9777.0650.950.95Pro onlyM L
M00498*73.681002100998899524.6685.2330.850.87Pro onlyM L
M00499*73.681002100998899525.7275.6850.890.89Pro onlyM L
M00500*73.681002100998899525.9026.6730.870.90Pro onlyM L
M00655*72.971002100898899426.1246.1240.840.84Pro onlyM L
MA008075.001002100798899318.7118.7111.001.00SPI-1M L
MA009875.001002100798899327.7977.7971.001.00c-ETSM L
M00704*75.001003100898999415.1175.1170.820.82Pro onlyM L
M00807*65.8510041014990100017.0758.5160.820.86Pro onlyM only
MA010375.001005101099199624.4595.6290.810.86deltaEF1M L
M00695*67.571007101399399915.7795.6630.840.84Pro onlyM L
M00695*51.35102410301008101419.7705.7791.000.84Pro onlyM only
M00469*53.85110911171066107427.0168.9050.890.95Pro onlyM L
M00470*53.85110911171066107427.7188.7350.890.92Pro onlyM L
MA000353.85110911171066107427.0168.9050.890.95AP2alphaM L
M00915*65.12113111431088110019.4756.8940.870.80Pro onlyM C L
M00428*63.16113411411091109825.0656.5480.850.91Pro onlyM C L
M00469*61.541134114210911099110.1054.3130.990.80Pro onlyM C L
M00469*61.54113411421091109929.6918.1920.980.93Pro onlyM C L
M00470*61.541134114210911099110.9155.2910.990.81Pro onlyM C L
M00470*61.541134114210911099210.4197.8350.970.89Pro onlyM C L
MA000361.541134114210911099110.1054.3130.990.80AP2alphaM C L
MA000361.54113411421091109929.6918.1920.980.93AP2alphaM C L

BLASTZ

BLASTZ ALIGNMENT

                  10        20        30        40        50        60        70        80        90       100
seq1      cttgagcaaattggtggatggtggtgtcatttactgaaacggaaaatacaggatgagcagattaaaggtgaacatgcaatgaatgaaattttcaattttg
                     |  |           || | |  |  ||   | |       |       |   |   | ||     |||||||     |||      | 
seq2      tactgaacctcttataaccttgaccatcttgtcatttaaaaaagagggtgtcaccctggtagccagtcttaaagcaaaatgaatcctcattttggaagtc
                  10        20        30        40        50        60        70        80        90       100

                 110       120       130       140       150       160       170       180       190       200
seq1      tgtatgttggtctgagatgccttttggatacatgttgtatacatgcttacatgagtaagcaactggtatgaattgacggagagggaggaaggacagggca
          || |     |    | |       ||  || || |   |          ||  |||   |       |  |    | |    | | |     |       
seq2      tgcactcaaggaaaaaaaaaagcatgactaaatatccaacttcctagctcagtagtcgtctttcctgagtagaaaaggctcggagtgttttaatcccctt
                 110       120       130       140       150       160       170       180       190       200

                 210       220       230       240       250       260       270       280       290       300
seq1      gaagatagagctgtgggagtcatcggttccttgacagaatttacagcgtggtaatggatagactctatgctatccatctatggaacaacacatctggagA
              |    |  | |   |  ||     ||    |   | |    |  | |||    | | |   |     |    ||   || ||||| |      | |
seq2      ttccacgtggaagggctggggatgtcacccactgccagagtgcttgtctagtatgccacaaaggatgcttgagatgtcccggggacaacgcggtgaaacA
                 210       220       230       240       250       260       270       280       290       300

                 310       320       330       340       350       360       370       380       390       400
seq1      AGAGAGaagagctggggaggctggactgtagccttgggagtggctattaaaataggagaaggggtggagcggaagggagagaggaactatggagtgctta
          |  |||| ||   |  | ||     |   | |   ||      |||  | |   |  |    |      |    |  || |   |   | |  | |    
seq2      ACTGAGaggaaaggaagggggcaagcaaaaacagaggagtaccctacaatagatgacggctagactagcccagggaaagtgcatagagaggaggaggagt
                 310       320       330       340       350       360       370       380       390       400

                 410       420       430       440       450       460       470       480       490       500
seq1      gcaagagaagaaagtgttttaaggatggggatgataaactgcattgaaagccactgagaggtggagaaaaaatcagggcagagaagtaataaaaggcatc
              |     |   |      || | ||     |  ||    |  |     ||          |   ||     |||      ||  | | |    ||  
seq2      ctgtgcacgtagttttgggacagaagggatgaaaggaagaaaaaaggtgagcaactgctctgaggataactgaaaggttgagaaaagattgacgcacaga
                 410       420       430       440       450       460       470       480       490       500

                 510       520       530       540       550       560       570       580       590       600
seq1      agcaacatggaagtcactggtgactcgcgaaaggcgatcacctttggtgtgtagggcacaaaagcctgggggggtaaagagagagtggaaagtaagaatg
          |  || | ||  | | | |  |    ||    |      |      | ||      | || |||   |  | ||    || | |  |    |  |  |||
seq2      ataaagagggttggctcagtgggagagccttggtatgcaagaaaccgagttccacccccacaagggggcagaggaggggaaacatggctttggcaacatg
                 510       520       530       540       550       560       570       580       590       600

                 610       620       630       640       650       660       670       680       690       700
seq1      tcgagacagtcgactattattgccattttatgaatgaagaaaccgaggctcaatatttgactgtctcattcaaggtgaaagccagtggggtcagatcctg
            ||||     | |    |              |   | | | | ||  |    |    |  |  |     |  |   |        |    |   |   
seq2      gagagatgaagggcacagaaatttgacggggtcagtcaaagatctagagtgggcaaagtaagggtttggagacaggtgatcatcaccgacaaaccccaat
                 610       620       630       640       650       660       670       680       690       700

                 710       720       730       740       750       760       770       780       790       800
seq1      gacctagaatccatgcaatgatttgtgcacatcgcctattgaagagagagatccaattctcttccaaaacgtaaaagccaacacttccctcaaaggaggc
                 |    |         || |    |    |        ||     |||        ||                 ||     | |         
seq2      acggagtaccaaagcagtgttgttatagggaggcgcagccacccaggagattcccgcagcgctcttccgaccttcgaaagccaaccaacccttcaactaa
                 710       720       730       740       750       760       770       780       790       800

                 810       820       830       840       850       860       870       880       890       900
seq1      ttcgagttaaatcatcctttcacgatgccgcttccattttaaagaaaaaaaaaaaaaaacgagaaggcctggtgcgggataggaatgagccgaggagcta
               |      | |    |||   | ||         | | |       | ||            |||  ||  |      |   ||||      || |
seq2      aggatgcaggggcctgaaatcatccttccaagaagcagtcataaccttggagaaggccggcttcccgccctgtctgcagagcgggcgagcgcgctcgcga
                 810       820       830       840       850       860       870       880       890       900

                 910       920       930       940       950       960       970       980       990      1000
seq1      ctggccctctcggtcgggggaagacccgccccttttccgcagcccgagcccggcgcagtccactgcggctgcgcgagcctggcgcgcgcggggcgggaac
            | ||| | |    | |    |     | ||  |        |   ||           |   |||   |   | |   || |     |  |  |   |
seq2      aggccccgcccctcggcgccgcgcgagcctcccctgagcgccgcactgcggctgcgccggccgggcgcgcggaggggggcggggacgcggaaggcgcggc
                 910       920       930       940       950       960       970       980       990      1000

                1010      1020      1030      1040      1050      1060      1070      1080      1090      1100
seq1      gcggaaggggctggggttgcggcgcggcggcgaggaccagaccgggggcggggccggtagtgggagtgcggggcgcgcggtgacagcgcggggttggcgg
          |     || |   | |  |  |   |   |      | ||| | |  ||| ||   |  | |         ||||  ||  | |   | || |   |   
seq2      ggccggggaggctgcggcggcggcggcgcggtgaagcgagagccgacgcgcggggcgaggggacgcccgacggcgtccgagggcgcggtggcgcgaggcc
                1010      1020      1030      1040      1050      1060      1070      1080      1090      1100

                1110      1120      1130      1140      1150      1160      1170 
seq1      cgtgggacccagggggcgacagaggcagcagcagcccgaggcctgaggagaggagaccggcggcggcggca
           | ||||      | |                                                       
seq2      tgagggaggggacgcg-------------------------------------------------------
                1110                                                             

BLASTZ ALIGNED HITS

MatrixIdentitySeq1 fromSeq1 toSeq2 fromSeq2 toStrandScore1Score2Rel.Score1Rel.Score2FactorFound by:
C = CONREAL
L = LAGAN
M = MAVID
B = BLASTZ
M00747*51.3530030630030625.6586.0750.810.82Pro onlyB L

Run time: 86.8 sec