Results for the job "lBmtQL Fri Jun 18 19:56:31 2004":

Parameters:
  PWM threshold: 80 %
  Homology threshold: 50 %
  Flank length: 15 bp


Plain files:
  Raw TFBSs data
  List of CONREAL aligned TFBSs
  CONREAL alignment

Graphical representation of aligned TFBSs.

Bars represent number of aligned hits found within 20 bp window calculated in coordinates of the longer sequence.
Each black line represents an aligned TFBS.

CONREAL:



CONREAL alignment:

Aligned TFBSs are shown in uppercase.
No attempts were made to align regions not covered by TFBSs (lowercase).

                  10        20        30        40        50        60
Human-NM_0aggaaggtaggggccggggaggagaggcagggctcataaagagggattggccttggagag
          |  |    |||  ||  |  | | | |    |  |       |  | | | | |   |  
mouse-NM_176785accaccacaggaaccacgtggtacaaggcaagaaccagctccgaaagttgtcctctggcc
                  10        20        30        40        50        60

                  70        80        90       100       110       120
Human-NM_0aggaggaaaactgctcacctgaaaaggcagtcaaggggtggaaggacccctgcatacaaa
               |            |  |          |  |   | |   |  |    | ||| |
mouse-NM_176785tctgagtgggtgttgtggcgtatgcccataatattgcacgcacacaaacacagacacaca
                  70        80        90       100       110       120

                 130       140       150       160       170       180
Human-NM_0tttgtaggtgttactgaagagtcggtacacaggctcagtgctTCTAAATTatgtttctct
          |   ||           | |  |       |           | ||| |||  ||    |
mouse-NM_176785tagatacacacacaaacacacacacattcaa-----------TATAATTTaatttaaatt
                 130       140       150                  160       17

                 190       200       210       220       230       240
Human-NM_0gttttggtttgggtgatgagttgttgatatgataaagtgatttgttgcactgactctgga
           ||   |     |  |          | |   || | | || | |     ||        
mouse-NM_176785tttaatgaggaaggcagtgaacaggaacaaagtagaataatatatatatgtgtaaaaatg
          0       180       190       200       210       220       23

                 250       260                                        
Human-NM_0gccagagtgcctgtggttgaaatcc-----------------------------------
           |     |  ||  |     ||                                      
mouse-NM_176785ccagccatagcttggtcaataaagtgcatacctcaaaagcttaagacgctaattctatcc
          0       240       250       260       270       280       29

                                                                      
Human-NM_0------------------------------------------------------------
                                                                      
mouse-NM_176785tcaatgcttggtattgtggttcgagtctataatcccagcgtgggagactgaagcaggagg
          0       300       310       320       330       340       35

                                                                      
Human-NM_0------------------------------------------------------------
                                                                      
mouse-NM_176785atctcccgagctcattggctggctagcacaacctagtgggtgagaggtcctagtgaaaga
          0       360       370       380       390       400       41

                                                                      
Human-NM_0------------------------------------------------------------
                                                                      
mouse-NM_176785agttctctcaaaacagtgtagaaggttggcttctgaggaaagacactgaggctgacctcc
          0       420       430       440       450       460       47

            270       280       290       300       310       320     
Human-NM_0CACCTCCACCACttaatacctgcttgatcttagttaagttacgtaatctctctgtgcttc
            ||| |||   |  | ||  |  | |   ||   | |    | |  |  ||      | 
mouse-NM_176785AGCCTTCACAGGtgcacacaggactaagaatatggaggaaggggatgcgatcatgaaatt
          0       480       490       500       510       520         

            330       340       350       360       370       380     
Human-NM_0atcctccttatctgtaaaagggactaggggatagagaaggctgtcacatagtgatatgga
                                                                      
mouse-NM_176785------------------------------------------------------------
                                                                      

            390       400       410       420       430       440     
Human-NM_0agtgGTTTTCTTTCCTtccttccttctctctctctctctttctttctttctgtcTTTTTA
                || ||||   | ||  ||||                              ||||
mouse-NM_176785----CATTACTTTGTAtgctgacttca---------------------------AATTTA
            530       540       550                                  5

              450       460       470       480       490       500   
Human-NM_0AAa--TTTTTATAgagacaaggtctgcctatgttgctcaggctggtctcgaacgcctggc
          |||  | | |||| |||| |||  ||    || ||  |        |   |       | 
mouse-NM_176785AAacaTATGTATAaagaccagggatggtagtgatgaactttaatcacggcacttgggagg
          60       570       580       590       600       610       6

              510       520       530       540       550       560   
Human-NM_0ctcaagcaatcctcccacctcagcctcccaaagtgctaagattataggcgtgagccaccg
          |  |  ||       | |       |        ||   |      |  |   |  | | 
mouse-NM_176785cagagacaggagaatctctgtgaatttgtggccagcctggtgagcggagggttgttaacc
          20       630       640       650       660       670       6

              570       580       590       600       610       620   
Human-NM_0cgcccagccatgtttactatttcCACTAGATTgtcatctcCATGAGGTTGAGGTTTTCTA
             |      |            ||||| |||        || | ||||||| ||| |||
mouse-NM_176785ttacagtttttc-----------CACTAAATTtc------CAGGCGGTTGAGATTTGCTA
          80       690                  700             710       720 

              630       640       650       660       670       680   
Human-NM_0TTTTGTTTAgggctgtctactcagagcctggcacaaagcatgtgctcaacgaaaatttcc
          ||| ||   ||    |    |   ||      || |   ||  | | || ||        
mouse-NM_176785TTTGGTCAGggctgatacggtgtcagtactcaaccacaaataaggtgaaagagcgaggtt
                730       740       750       760       770       780 

              690       700       710       720       730       740   
Human-NM_0tgaatgagtaaattggggtgaaattcttgggagaggggctcagggggcTGGAATCCctat
             |            | |   |  | |      || ||          |||| |   | 
mouse-NM_176785cagaaagaagggagacgttttgagacattctcacggtgcct-------AGGAAACTtgaa
                790       800       810       820              830    

              750       760       770       780       790       800   
Human-NM_0tcctgcgtgggactccgggccactgggcggcgtcctggggtctggggaagggcctccccc
          ||| | | |||   ||                                            
mouse-NM_176785tccagagcggggaccc--------------------------------------------
             840       850                                            

              810       820       830       840       850       860   
Human-NM_0tgcgccgagagcgtgcccgggcgggcgcggtccaggcgctgagccccTGGGGCGCTCccg
                                                         | ||| ||| | |
mouse-NM_176785-----------------------------------------------TTGGGTGCTGcgg
                                                                860   

              870                                 880       890       
Human-NM_0tgGCTCCTCc--------------------------CCCGGCGGGcgtgtagtgtcggcc
            ||||||||                          ||||||| ||       |  || |
mouse-NM_176785atGCTCCTCcctcggacatcttcccgcagctccgccCCCGGCGCGcagcgctagcggggc
              870       880       890       900       910       920   

          900       910       920                 930       940       
Human-NM_0cagcgactgcggGAGGCATCCCGGAGc----------CGGCCGGGCGGGGCGGAGTCGAc
            ||        | |  |||||||| |           ||| |||| |||||||||||||
mouse-NM_176785gtgccctg----GGGCAATCCCGGACctcgcctggcgGGGCGGGGCCGGGCGGAGTCGAc
              930           940       950       960       970       98

          950       960       970       980       990      1000      1
Human-NM_0gctcggcccggcctctgctcacctcatccacgggagacggaagtcttggccctgctccgc
          | || | || |    ||     |            |   | |    |   ||     |  
mouse-NM_176785gttcagtccagggcttggctcacctcattcaccagggacggaagtgtcagccctgcac--
          0       990      1000      1010      1020      1030        1

          010                   1020      1030      1040      1050    
Human-NM_0TCCCCCGA-------------GAATCGGGCCTCGCCCTGCTGGGCGgctGGACCTGGGCa
          |||||||               | || ||||||||||  |||||||    | ||| ||| 
mouse-NM_176785TCCCCCGGgtaccaggactagCAGTCCGGCCTCGCCCCACTGGGCGatcAGGCCTTGGC-
          040      1050      1060      1070      1080      1090       

            1060      1070      1080      
Human-NM_0aagcctgggcgcgctcccgcgcagcggcgcc-
                                          
mouse-NM_176785-------------------------------T

CONREAL aligned hits:

Matrix Identity Seq1 from Seq1 to Seq2 from Seq2 to Strand Score1 Score2 Rel.Score1 Rel.Score2 Factor
M00471* 0.53 163 170 152 159 1 7.502 8.393 0.85 0.88 Pro only
M00378 0.57 266 277 470 481 1 7.634 5.736 0.87 0.81 Pax-4
M00500* 0.55 390 397 530 537 1 7.085 3.837 0.92 0.80 Pro only
M00493* 0.55 390 397 530 537 1 5.629 4.925 0.86 0.83 Pro only
M00148 0.54 392 398 532 538 2 7.723 6.998 0.95 0.92 SRY
M00486* 0.54 393 401 533 541 2 5.109 5.849 0.85 0.88 Pro only
M00471* 0.53 440 447 553 560 2 7.091 9.848 0.84 0.93 Pro only
M00471* 0.58 449 456 564 571 2 9.126 7.258 0.90 0.84 Pro only
M00240 0.54 587 593 691 697 2 6.785 6.437 0.85 0.83 Nkx2-5
M00690* 0.55 588 595 692 699 1 4.494 7.733 0.80 0.92 Pro only
M00726* 0.61 604 609 702 707 1 4.409 7.198 0.80 0.95 Pro only
M00271 0.64 606 611 704 709 1 7.367 5.088 0.90 0.81 AML-1a
M00378 0.64 608 619 706 717 2 6.747 6.747 0.85 0.85 Pax-4
M00690* 0.66 609 616 707 714 2 5.169 6.201 0.83 0.86 Pro only
M00486* 0.69 614 622 712 720 2 5.049 4.148 0.85 0.81 Pro only
M00624* 0.68 616 622 714 720 2 5.144 8.012 0.84 0.95 Pro only
M00793* 0.59 620 628 718 726 1 7.002 6.776 0.83 0.82 Pro only
M00395 0.59 620 628 718 726 1 4.070 5.512 0.82 0.90 HOXA3
M00791* 0.56 620 632 718 730 2 7.325 9.138 0.82 0.87 Pro only
M00724* 0.56 622 632 720 730 1 7.974 10.109 0.86 0.91 Pro only
M00500* 0.50 732 739 823 830 2 5.013 7.687 0.84 0.94 Pro only
M00499* 0.50 732 739 823 830 2 5.113 5.473 0.86 0.88 Pro only
M00493* 0.50 732 739 823 830 2 6.065 6.748 0.88 0.91 Pro only
M00496* 0.50 732 739 823 830 2 5.052 6.332 0.85 0.90 Pro only
M00494* 0.50 732 739 823 830 2 5.923 6.583 0.86 0.89 Pro only
M00497* 0.50 732 739 823 830 2 6.852 5.291 0.94 0.87 Pro only
M00749* 0.68 851 857 851 857 2 6.983 7.219 0.85 0.86 Pro only
M00449* 0.67 852 860 852 860 1 6.916 7.481 0.82 0.84 Pro only
M00695* 0.62 866 872 866 872 2 4.962 4.962 0.81 0.81 Pro only
M00803* 0.64 874 879 900 905 2 5.868 5.868 0.86 0.86 Pro only
M00803* 0.61 877 882 903 908 1 8.271 9.046 0.97 1.00 Pro only
M00054 0.62 910 919 932 941 1 7.060 9.203 0.81 0.86 NF-kappaB
M00076 0.62 911 920 933 942 2 7.109 6.742 0.91 0.90 GATA-2
M00075 0.62 911 920 933 942 2 7.014 6.700 0.92 0.90 GATA-1
M00497* 0.61 911 918 933 940 2 4.201 3.781 0.82 0.80 Pro only
M00087 0.64 912 923 934 945 2 8.144 9.470 0.87 0.91 Ik-2
M00470* 0.67 925 933 957 965 2 5.478 5.000 0.82 0.80 Pro only
M00469* 0.67 925 933 957 965 2 6.038 5.927 0.86 0.85 Pro only
M00196 0.65 927 939 959 971 1 13.098 11.781 0.91 0.89 Sp1
M00649* 0.71 929 936 961 968 1 7.201 6.664 0.82 0.80 Pro only
M00695* 0.70 929 935 961 967 1 5.779 7.466 0.84 0.91 Pro only
M00008 0.70 929 938 961 970 1 8.870 7.728 0.89 0.85 Sp1
M00470* 0.69 930 938 962 970 2 5.000 5.316 0.80 0.81 Pro only
M00469* 0.69 930 938 962 970 2 5.927 6.020 0.85 0.86 Pro only
M00196 0.70 932 944 964 976 1 13.220 10.796 0.92 0.86 Sp1
M00695* 0.73 934 940 966 972 1 9.502 5.779 0.99 0.84 Pro only
M00008 0.72 934 943 966 975 1 9.770 7.870 0.92 0.86 Sp1
M00803* 0.75 936 941 968 973 1 5.589 5.589 0.84 0.84 Pro only
M00695* 0.73 937 943 969 975 1 5.230 5.230 0.82 0.82 Pro only
M00497* 0.71 938 945 970 977 2 3.900 3.900 0.81 0.81 Pro only
M00646* 0.71 939 946 971 978 1 5.551 5.551 0.80 0.80 Pro only
M00083 0.53 1008 1015 1038 1045 2 7.036 7.036 0.85 0.85 MZF1
M00469* 0.56 1016 1024 1059 1067 2 4.294 4.935 0.80 0.82 Pro only
M00196 0.60 1022 1034 1065 1077 2 8.507 9.440 0.82 0.84 Sp1
M00761* 0.57 1022 1031 1065 1074 2 6.671 6.671 0.85 0.85 Pro only
M00008 0.57 1023 1032 1066 1075 2 6.260 7.531 0.81 0.85 Sp1
M00469* 0.56 1023 1031 1066 1074 1 5.337 5.337 0.84 0.84 Pro only
M00706* 0.59 1024 1032 1067 1075 2 7.023 7.023 0.83 0.83 Pro only
M00695* 0.59 1024 1030 1067 1073 2 5.070 5.070 0.81 0.81 Pro only
M00428* 0.58 1024 1031 1067 1074 1 5.065 5.065 0.85 0.85 Pro only
M00716* 0.58 1024 1031 1067 1074 2 7.102 7.102 0.88 0.88 Pro only
M00649* 0.61 1025 1032 1068 1075 2 7.576 8.774 0.84 0.88 Pro only
M00803* 0.61 1025 1030 1068 1073 2 5.501 5.501 0.84 0.84 Pro only
M00469* 0.64 1028 1036 1071 1079 1 5.470 5.433 0.84 0.84 Pro only
M00189 0.67 1029 1040 1072 1083 2 6.368 7.253 0.80 0.83 AP-2
M00468* 0.68 1030 1036 1073 1079 2 5.272 8.537 0.84 1.00 Pro only
M00469* 0.69 1031 1039 1074 1082 2 4.721 6.156 0.81 0.86 Pro only
M00727* 0.58 1044 1051 1087 1094 1 7.682 7.419 0.86 0.85 Pro only
M00469* 0.54 1045 1053 1088 1096 2 5.753 4.445 0.85 0.81 Pro only